RNA id: TU81388



Basic Information


Item Value
RNA id TU81388
length 268
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G60682
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11119777 ~ 11120044 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gcacaagtaacacaaatttccaaacctactttttttacaaggctctgcaggcagaactagaacaaggtaatggagctgttgtttggcacttttactaaggtaaacatgctttcattatgaggccagatgcctgtactacgaagcaagatttggggttaacgagctaacttcaggttcaacccagggttttctttatcaccaaggtggatcacttgataccgggttcaatcgccgtggtaactcatgctggacgcctaacctggttgGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81312 lncRNA upstream 214148 10902061 ~ 10905629 (+) True G60620
TU81298 lncRNA upstream 266871 10812779 ~ 10852906 (+) True G60607
TU81299 lncRNA upstream 279460 10814563 ~ 10840317 (+) True G60608
TU81296 lncRNA upstream 305708 10812779 ~ 10814069 (+) False G60607
TU81262 lncRNA upstream 348953 10770546 ~ 10770824 (+) True G60577
TU81410 lncRNA downstream 37890 11157934 ~ 11158234 (+) True G60698
TU81440 lncRNA downstream 90621 11210665 ~ 11223962 (+) True G60722
TU81441 lncRNA downstream 91544 11211588 ~ 11214100 (+) True G60723
TU81448 lncRNA downstream 114303 11234347 ~ 11234580 (+) True G60730
TU81498 lncRNA downstream 368322 11488366 ~ 11544659 (+) True G60780
XM_039804113.1 mRNA upstream 367337 10748117 ~ 10752440 (+) False LOC120561144
XM_039804112.1 mRNA upstream 372824 10726438 ~ 10746953 (+) True LOC120561142
XM_039804111.1 mRNA upstream 372824 10726439 ~ 10746953 (+) False LOC120561142
XM_039803880.1 mRNA upstream 1138723 9927049 ~ 9981054 (+) False LOC120560959
XM_039802043.1 mRNA downstream 52975 11173019 ~ 11188211 (+) False marveld2b
XM_039802044.1 mRNA downstream 53030 11173074 ~ 11188211 (+) False marveld2b
XM_039802042.1 mRNA downstream 53743 11173787 ~ 11188211 (+) True marveld2b
XM_039804537.1 mRNA downstream 73443 11193487 ~ 11206112 (+) True oclnb
XM_039804538.1 mRNA downstream 73498 11193542 ~ 11206112 (+) False oclnb
XR_005639564.1 other upstream 367337 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 367337 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 367337 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 372829 10726446 ~ 10746948 (+) False LOC120561142
TU81096 other upstream 1138788 9927107 ~ 9980989 (+) False LOC120560959
TU81647 other downstream 806139 11926183 ~ 11926601 (+) True G60897
TU81938 other downstream 1801103 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 1801103 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 2987439 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 3021398 14141442 ~ 14142050 (+) True G61338

Expression Profile