RNA id: TU81558


Basic Information

Item Value
RNA id TU81558
length 659
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G60822
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11603778 ~ 11604436 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttgaagattattttttgggcttttccgcctttatttgacaggacagctagttgagaaaggggcgagagagagggggaagacatgcaggaaatcgtcacaagtcagatttgaactctggacctctgcgtcgaggcacaaacctccaagtatatgtgcgcctgctctacccgctcaccaatttgtttcttttgctgcagagattcaatacaaaaaaattattgacccatctcagagtagctttatagaatgtacggtttatgaaaaaaaggagacagaggcagaattgtcctggtactcctcttcctctcccttgtgaaggcatttttcttattttctgtgttcatctacagtatattgttcaaataggtcctcttttactgtactaccatatgatcatgtgattgaaagaacctcaacacctgagtgtgtttcctagaagggaatcagctgtgattgatctataacttcaatcagctgtttctcaataaatgcatgtataaaatgcaggggatatatttgtgtttcaatttacaatatgatcagctgttcactttgactttagcctataagttaggtttagaacatgatgttatctgttctgacatacagtgtgaaagcatttgtaaatttggcagtaaagatccattgttttggtttt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process

KEGG:

id description
ko00630 Glyoxylate and dicarboxylate metabolism
ko00360 Phenylalanine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81557 lncRNA upstream 167 11603180 ~ 11603611 (+) True G60821
TU81498 lncRNA upstream 59119 11488366 ~ 11544659 (+) True G60780
XR_005639578.1 lncRNA upstream 75023 11528049 ~ 11528755 (+) True LOC120561253
TU81448 lncRNA upstream 369198 11234347 ~ 11234580 (+) True G60730
TU81440 lncRNA upstream 379816 11210665 ~ 11223962 (+) True G60722
TU81608 lncRNA downstream 191545 11795981 ~ 11796327 (+) True G60864
TU81626 lncRNA downstream 264189 11868625 ~ 11873116 (+) True G60876
XR_005639416.1 lncRNA downstream 269056 11873492 ~ 11876959 (+) True LOC120560076
XR_005639417.1 lncRNA downstream 272537 11876973 ~ 11880769 (+) True LOC120560077
TU81641 lncRNA downstream 293657 11898093 ~ 11898916 (+) True G60891
XM_039804287.1 mRNA upstream 27424 11573980 ~ 11576354 (+) True LOC120561249
XM_039804291.1 mRNA upstream 326294 11275018 ~ 11277484 (+) True ankrd34bb
XM_039804304.1 mRNA upstream 371891 11218951 ~ 11231887 (+) True gtf2h2
XM_039804305.1 mRNA upstream 371891 11218993 ~ 11231887 (+) False gtf2h2
XM_039804538.1 mRNA upstream 397666 11193542 ~ 11206112 (+) False oclnb
XM_039803776.1 mRNA downstream 124026 11728462 ~ 11790629 (+) True stxbp1b
XM_039803777.1 mRNA downstream 126158 11730594 ~ 11788757 (+) False stxbp1b
XM_039804627.1 mRNA downstream 233322 11837758 ~ 11848140 (+) False LOC120561470
XM_039804630.1 mRNA downstream 233748 11838184 ~ 11848140 (+) False LOC120561470
XM_039804626.1 mRNA downstream 237244 11841680 ~ 11848140 (+) True LOC120561470
XR_005639564.1 other upstream 851338 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 851338 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 851338 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 856830 10726446 ~ 10746948 (+) False LOC120561142
TU81096 other upstream 1622789 9927107 ~ 9980989 (+) False LOC120560959
TU81647 other downstream 321747 11926183 ~ 11926601 (+) True G60897
TU81938 other downstream 1316711 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 1316711 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 2503047 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 2537006 14141442 ~ 14142050 (+) True G61338

Expression Profile