RNA id: TU81626


Basic Information

Item Value
RNA id TU81626
length 435
lncRNA type inter_gene
GC content 0.53
exon number 9
gene id G60876
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11868625 ~ 11873116 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTAAAGAATGGTGAGTTGTTACTAAGATGACCATGCGCATTTTAACCAGATTCAAATTTTAAGTTAAGTATTTGTATTAAACTATCTGTCTTTGTTGTCAGTGGGCGTCAACAGATCAAATAGTGGTTCACCCAGGTCTGCGGGCCGTGACAGGTCAACTGGTCGTACAGCCAGGTCTGCAGGCCGTGACAGGTCAACTAGTGGTTCACCCAGGTCTGCGGGCCGTGACAGGTCAACTAGTCGTACAGCCAGGTCTGCGGGCCGTGACAGGACAACTAGTCGCACACCCAGGTCTTTGGACAGGTCAACTAGTGGTTCACCCAGGTCTGCGGGCCGTGACAGGTCAACTAGTGGTTCACCCAGGTCTGCGGGCCGTGACAGGTCAACTAGTCGTTCACCCAGGTCTGCAGGCCGTGACAGGACAACTAGTCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81608 lncRNA upstream 72298 11795981 ~ 11796327 (+) True G60864
TU81558 lncRNA upstream 264189 11603778 ~ 11604436 (+) True G60822
TU81557 lncRNA upstream 265014 11603180 ~ 11603611 (+) True G60821
TU81498 lncRNA upstream 323966 11488366 ~ 11544659 (+) True G60780
XR_005639578.1 lncRNA upstream 339870 11528049 ~ 11528755 (+) True LOC120561253
XR_005639416.1 lncRNA downstream 376 11873492 ~ 11876959 (+) True LOC120560076
XR_005639417.1 lncRNA downstream 3857 11876973 ~ 11880769 (+) True LOC120560077
TU81641 lncRNA downstream 24977 11898093 ~ 11898916 (+) True G60891
TU81642 lncRNA downstream 26607 11899723 ~ 11899950 (+) True G60892
TU81643 lncRNA downstream 32530 11905646 ~ 11905914 (+) True G60893
XM_039804627.1 mRNA upstream 20485 11837758 ~ 11848140 (+) False LOC120561470
XM_039804630.1 mRNA upstream 20485 11838184 ~ 11848140 (+) False LOC120561470
XM_039804626.1 mRNA upstream 20485 11841680 ~ 11848140 (+) True LOC120561470
XM_039804629.1 mRNA upstream 20485 11841680 ~ 11848140 (+) False LOC120561470
XM_039803776.1 mRNA upstream 77996 11728462 ~ 11790629 (+) True stxbp1b
XM_039802658.1 mRNA downstream 248309 12121425 ~ 12158698 (+) True dpp7
XM_039804008.1 mRNA downstream 600965 12474081 ~ 12501550 (+) True LOC120561040
XM_039804006.1 mRNA downstream 601057 12474173 ~ 12485766 (+) True LOC120561039
XM_039803770.1 mRNA downstream 867750 12740866 ~ 12748536 (+) True fgf17
XM_039803771.1 mRNA downstream 867750 12740866 ~ 12748536 (+) False fgf17
XR_005639564.1 other upstream 1116185 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 1116185 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 1116185 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 1121677 10726446 ~ 10746948 (+) False LOC120561142
TU81096 other upstream 1887636 9927107 ~ 9980989 (+) False LOC120560959
TU81647 other downstream 53067 11926183 ~ 11926601 (+) True G60897
TU81938 other downstream 1048031 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 1048031 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 2234367 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 2268326 14141442 ~ 14142050 (+) True G61338

Expression Profile