RNA id: TU81641


Basic Information

Item Value
RNA id TU81641
length 824
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G60891
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11898093 ~ 11898916 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgaaaagagatgcaacaaaatatttattaatttaatgattaaataaggtaatgtctccaaacgtaCCTCAATtgtaacttgtctcctgctagttatactacagcacttactttaaaaaaaaaaatttaattaataaatatttttgttgcatctcttttcggtgttggaatttgtagacggccctaagcactcttactgccgggtagtaacagcagcagcagcagcaacaacagagagcagaagccaacaggcaagtgttatttacataaacttctggtgtactcacaaactttccaatccatcgttttatgagtacataacctatttgtactagtgtagaagtttggtatcatatcgggcattattagtggggagatacaaacgtggatccattagcccctgcgctaagctattcagctgataactctcccaatgttcgacccaagtgaaaaaagcttctgatggggtgtttggctcgaggtcatggtgcaaaggaccctagggtgaaattactccgaaccattaCTTTAAGGGGAAagaccagaaaaaaaacacatataccACTGTCTGTTCTCTCTGGCCTTTTCTACAGCAGAGGTTTACAACGATGTCATGCTAATAATGACAGGATACTCTGATCAGTGTTTCCTGTACAGTGCACTAGCAAATCACGGATTCATTATGGAGTGTCAGAACTCATCAGCATCCCACAGAGTGCAAGATATGCTCATTCATACAGTAGGACCTTCATTTTTCTTCAATGTGTTGTTGTAGGTGTTTGGATGTGGTTTCATATAGAATATGgcccaaaaaaaactaaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639417.1 lncRNA upstream 17324 11876973 ~ 11880769 (+) True LOC120560077
XR_005639416.1 lncRNA upstream 21134 11873492 ~ 11876959 (+) True LOC120560076
TU81626 lncRNA upstream 24977 11868625 ~ 11873116 (+) True G60876
TU81608 lncRNA upstream 101766 11795981 ~ 11796327 (+) True G60864
TU81558 lncRNA upstream 293657 11603778 ~ 11604436 (+) True G60822
TU81642 lncRNA downstream 807 11899723 ~ 11899950 (+) True G60892
TU81643 lncRNA downstream 6730 11905646 ~ 11905914 (+) True G60893
TU81644 lncRNA downstream 7527 11906443 ~ 11906869 (+) True G60894
TU81646 lncRNA downstream 22115 11921031 ~ 11921389 (+) True G60896
TU81651 lncRNA downstream 89251 11988167 ~ 11988733 (+) True G60901
XM_039804627.1 mRNA upstream 49953 11837758 ~ 11848140 (+) False LOC120561470
XM_039804630.1 mRNA upstream 49953 11838184 ~ 11848140 (+) False LOC120561470
XM_039804626.1 mRNA upstream 49953 11841680 ~ 11848140 (+) True LOC120561470
XM_039804629.1 mRNA upstream 49953 11841680 ~ 11848140 (+) False LOC120561470
XM_039803777.1 mRNA upstream 109336 11730594 ~ 11788757 (+) False stxbp1b
XM_039802658.1 mRNA downstream 222509 12121425 ~ 12158698 (+) True dpp7
XM_039804008.1 mRNA downstream 575165 12474081 ~ 12501550 (+) True LOC120561040
XM_039804006.1 mRNA downstream 575257 12474173 ~ 12485766 (+) True LOC120561039
XM_039803770.1 mRNA downstream 841950 12740866 ~ 12748536 (+) True fgf17
XM_039803771.1 mRNA downstream 841950 12740866 ~ 12748536 (+) False fgf17
XR_005639564.1 other upstream 1145653 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 1145653 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 1145653 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 1151145 10726446 ~ 10746948 (+) False LOC120561142
TU81096 other upstream 1917104 9927107 ~ 9980989 (+) False LOC120560959
TU81647 other downstream 27267 11926183 ~ 11926601 (+) True G60897
TU81938 other downstream 1022231 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 1022231 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 2208567 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 2242526 14141442 ~ 14142050 (+) True G61338

Expression Profile