RNA id: TU81644


Basic Information

Item Value
RNA id TU81644
length 427
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G60894
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11906443 ~ 11906869 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagttttaattgaggtaggtccatattaggcctatagtttagaaatgttaagttcacccatatcttctgccagaggataagagctcatacttggcatggagaataaagatagagcagaccatattctgtgtgcttgcctggagagactggtttctattcctctccacaaccttcatgacagtcataataaaatgctctgtaatgcagccttgtataacacaaaccatctgattcaccgtgtgtgtctgctctaaatgataagacacactttcaacacgggccttccagccaaaggtgcatgttgtccatatgaacaccattgggcctataggagcagagccgatggattggttcattatttatgacctctgatatcctctgacccagctctatctcgagagttacctcaacttcagtttcaaagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81643 lncRNA upstream 529 11905646 ~ 11905914 (+) True G60893
TU81642 lncRNA upstream 6493 11899723 ~ 11899950 (+) True G60892
TU81641 lncRNA upstream 7527 11898093 ~ 11898916 (+) True G60891
XR_005639417.1 lncRNA upstream 25674 11876973 ~ 11880769 (+) True LOC120560077
XR_005639416.1 lncRNA upstream 29484 11873492 ~ 11876959 (+) True LOC120560076
TU81646 lncRNA downstream 14162 11921031 ~ 11921389 (+) True G60896
TU81651 lncRNA downstream 81298 11988167 ~ 11988733 (+) True G60901
TU81831 lncRNA downstream 696887 12603756 ~ 12604210 (+) True G61050
TU81833 lncRNA downstream 700775 12607644 ~ 12608057 (+) True G61052
TU81834 lncRNA downstream 702235 12609104 ~ 12609458 (+) True G61053
XM_039804627.1 mRNA upstream 58303 11837758 ~ 11848140 (+) False LOC120561470
XM_039804630.1 mRNA upstream 58303 11838184 ~ 11848140 (+) False LOC120561470
XM_039804626.1 mRNA upstream 58303 11841680 ~ 11848140 (+) True LOC120561470
XM_039804629.1 mRNA upstream 58303 11841680 ~ 11848140 (+) False LOC120561470
XM_039803777.1 mRNA upstream 117686 11730594 ~ 11788757 (+) False stxbp1b
XM_039802658.1 mRNA downstream 214556 12121425 ~ 12158698 (+) True dpp7
XM_039804008.1 mRNA downstream 567212 12474081 ~ 12501550 (+) True LOC120561040
XM_039804006.1 mRNA downstream 567304 12474173 ~ 12485766 (+) True LOC120561039
XM_039803770.1 mRNA downstream 833997 12740866 ~ 12748536 (+) True fgf17
XM_039803771.1 mRNA downstream 833997 12740866 ~ 12748536 (+) False fgf17
XR_005639564.1 other upstream 1154003 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 1154003 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 1154003 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 1159495 10726446 ~ 10746948 (+) False LOC120561142
TU81096 other upstream 1925454 9927107 ~ 9980989 (+) False LOC120560959
TU81647 other downstream 19314 11926183 ~ 11926601 (+) True G60897
TU81938 other downstream 1014278 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 1014278 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 2200614 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 2234573 14141442 ~ 14142050 (+) True G61338

Expression Profile