RNA id: XM_039803941.1


Basic Information

Item Value
RNA id XM_039803941.1
length 4249
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC120561001
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11901650 ~ 12061646 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTGAGAGCATCCAAAATCAGCGCTCCCTGCCAGTTGCGCACAGATCAGGCTCCGTCCTTGAAACCCGAAGGACTATAGAGTTTGTTCTGTGGACAGAATAAACATGAAGAAGgttgtatacattttttaaatttgcaaGGACAAAGGGAACCTTCCACGGATTTGTATTTGCTGGGTTTCACATATTACACCGGACACTATTTGAATCGCTGAAGCTCGTCCCGGTGAAGGCAGCGGTAAAGCTTTTGTTATACGTGGAATGAAAAGACAGAAGGACAAAAAGAACATATGATTTATTCAGTGCAAAACGAATGTGAGCTTTGTCTGGGACAATGGGTTTTTCTAGCTTGACACACCGTGTGCAGCGCACATCAGCGCCGTTATGCGCGAATAGATCATCGGTCACCTGTTGAAGTTGCCCGATGCGCGGTGAGCTATTTAACGTTTTGCTTTCAAACGGGAGGATCGACTTAAACATCGCTTTAACATATGATTGGCCCGTTCTACCGGCTCTGTATGATGCACTGATTCCCCGTTATGTTGTAGGATGAGCGCTGATCTGGAGCGCGTTTCGCTCAACACATCGGTGAACTCGGGCGGCCGTGCGCTTTCGGCAAACGTCCGGAGGCTCCACAACACTCTCAACCTGCTGCTCAGCGATCTGGAGAGAGAGCAGTTCATCCACTGTCTCAATGTGTACCACGCCAAGCGCAACGTCTTCGACCTGGTCCAAACTCTCAAAGTGATTCTCAACACGCCCAGCAAACGACAGCTGCTGCCCATGCTTCGCCTGGTCATTCCGAGGTCCGACCAGCTGCTGTTCGACCAGTACACGTCCGAGGGACTTTACCTGAAGACAGAGCTGCTCCCCAGCAACGGCAGCGCGGAGGTCTTTGGAGACGAGGGCGACTCAACTCTGCAGGAATATGTCAGTTCCATCCATGAGCAGCCCCTCACCTCCGGCTGTCCGGACGGTTTCAGCGCCGCCGCGGAGCTGTCGGCTTCCATGGCCCCGCCGTTTTTCGAGGGTCCCTTTGGAGAagtgcgcaaagtcaccctgaCGCGCTCCAGGAGCCACGAGGGTCTAGGCTTCAGCATCCGCGGGGGGTCAGAGCACGGCGTGGGGATCTACGTGTCCCTAGTGGAGCCGGGCTCGTCGGCCGAGAGAGAAGGACTGAGGGTTGGGGACCAGATAGTGACCGTGAACGACATGATGTTTGACAATGTCACTCACGTAGAAGCGGTGAAGGTACTAAAGGGATGCAAACAGATGGCTATTTCAGTGTGTTCCATGGGTCGGATCCCCGGAGGCTACATTACCAATCACGTGTACAGTTGGGTGGACCCTCAGGGCCGGAGTGTCTCCCCGCCACCCGACAGCCAAGAGGCCAACCAAAAGCAAGGACATGGCATGGAGGAGAGGACGGTAATCCTGAATATGGACGATGGTCGCTCTCTAGGCCTAATGATCAGAGGTGGTGCTGAATATGGACTAGGAATCTACATCACTGGAGTAGACCCTGGATCTGCTGCAGATGCTGGTGCACTAAAGGTGGGTGACCAGATCCTGGAATTGAACGGTCAGAGTTTTGTTACAATCTCCCATGATGAGGCAGTTCACATCCTCAAAACAGGACGGCACCTGCGGATGAAGGTGAGGGATGTGGGTCGTCTGCCTCATGCACGCACAGTGGTGGATGAAACCAAATGGATCTGCAGTCAGGCCATAGCTGAGACCAATGCTACAGCTAACACAAGTTCTTTCACCGACCCCACTGTCAATGCTGGCATCCACGTTAGTGCCAGTACCTGCAGTACAAGACCATCTTCAGCCAAAGCTACACCTATATTAGGGAAGCCAGCAGTATACAGAGGTGTGGGCCCACCAGGTGCTCAGGTGTCTCTGGATCAGCAGGCCTACATGCTTCTGACGGAGCCAGAGAGGCAGACCATGGCCTACTACCTGCAGGAATACCAGGAGGGACACATAGGAGTGGAGCCACTGGCTATGGCTCTGTTTGAGCTCTTTAACACACATGCAAAGTTGTCCATGTTGTCTGAAGTGAGGAGTCTGGTGGCTCCCCAGGACCTGGAATTGTATGACGGGCTGGTGTTGAACTGTGAAAGGGAGGCCTACCGGGCCTGGCATGGAGGCCTGGGAGTGCTGCATCCACAGGGCCACGGCAACCACATAGCCCCTGTGATCCATGATGCAGGACACACTGTCCCTGCTACAGTACATCCCTTATTTACTATACCTAAAAAGACTGACGGCTCTGTTGGTGGCTGGATCCAAAAGGACCAAGAGGAGAACACTAATGCCTTACATAAAATTGCGCTGAACGGAATGCAGGCTTCAGATGATTCTCCTTCATTCTGCAGGCCTGCCCCTCTCAAAGCTCAAAGCAGGCCATCCAGAGAGAAAGAGCTCAGCCGGAAACCTTCCGCCCGGCGCATGCAGCCTGGCTCCAGCCTGCTCTTCACAGGACCCACTCGGCTGCTTCAGGACTGCCTCCACAAGTCGCTTAAATCCCTCCCCACCACCCACCACTCCCCAGCAGCCTCTGCCCACCACACCTGCGCTGGTGCCAGCCACCACACTTCTCTCAATGCACTCCATCACACCTGCCAGAGTTCATTTCAACTCTCTGACTCTGAACACCAAAACCACCCCAACTTTGCTCATCACATTCACCACCACACCTGCCCAGGCTTCTTGCACCGCCAGGACTCCTCCAGCTCTGCTAAGCTAGATGCATCTGTCAAGCTCGCTTGCAGATCGAGCTCCTATGAGAAGTCCTCATACTTGTCAAAGTCTGTGCCATCCTCCAAAGCAGCATCTCCCATGCCATCCCCTCATCCATCACCCCATTCCTCGCCATGTCCCTCCCCCTGCCCCTCTCTTATCACAACTGCTGCTGCACCATATAGTCCTGTTCGGCCCTGCTCACCTGCCTTCCCCCAGAAAGTCATCATAACAGACATGAATCGGCTGTCTGCAGACTCCAGACCACAGCAAAGAGGGGCCACCCTGTCCCAGCTTTCAGACAGTGGCCAGACTCTGAGTGAGGACAGCGGGGTGGATATAGCCGAAGCAGGAGGACTCAGTAAAGATGGCAGCCCTCGACCCAGCAAGAACCAGCAGGGCCAATTGGAACAGCCAGGGGCCCATGCACCTCCTCCGGGGACCAGACAACAGAATGGCTCACCGGTCCCAGTGCCCACTCCTAACTTGATACGAGTGGTGAAAAATTCCAACACCCTTGGTATTGCTATAGAGGGAGGAGCCAACACACGCCAACCTTTGCCACGCATAGTCACCATTCAGAAAGGAGGCTCCGCTCATAACTGCGGTCAGCTGAAGGTGGGTCAGATCATCCTGGAGGTCAATGGCATTTCCCTGAGAGGTCGGGAGCACAAAGATGCTGCCAAGATCATAGCCGAGGCCTTCAAGACCAAAGAGAAGGACCACATTGACTTCCTGGTTGTTGATCCAGGACTATAGATCAGCACTATATTACTTGGCTGAAGAAGACACTGTTTTACTGCTTTAAAGGAACCGTATCAACTCCACATTGTCCAATAATCATGGCCCTCATTTTGATTTAAGCCAAAGGATTGGTGGAAATATATTTGCTCATTGCACTTCACAGAGCTTTAGAAAGATTTAGAAAAGGATATAACAATAATATTTGCCAAAACAATCATGTGCTTGTGTTTCATTAGTTTTCAAACCCTGAATGTTATTATATGTTTCACCAGGTGGTCTAGATTACTGTAGTACTGATAGTGTGGTTGTCAAACCAAATAATATGCCAAATGTATTGCAGTCAGTAAAGTCAGTCTTCAAGTTGTACTCCTCAAGGTAAATCAACACATTCTTACTCCCAGCCCGTCAAAAACTGACGTTTGGTCAGCTGCCTTTGTTGTTAGTTACTAATGCAACAAATGTCCGTAGCATCTCAGTCAGACACAGGGGGCTTTCAACTAATTTCAATGTAATCCCATCCGCAGCAATATTTGATGTTCTGGGTACCCCATTGGCATCATTTTTCAACACGCTAGGACGCCCTGGGTAGGGGTCTGCAGGGTAAAACCAATTAGAgttagggaaagattgtggGTGGAGTTAAAAATTAGCATTTAAGTGACAGGCAGGACACAAACCCTGGTcgcctgggtgaaagtccttttttgttttttcacttttgtttattcagggaaggttcatagagaggaagcctctc

Function

GO: NA

KEGG:

id description
K21879 WHRN, USH2D; whirlin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81654 lncRNA downstream 1986 11898266 ~ 11899664 (-) True G60904
TU81655 lncRNA downstream 3557 11897317 ~ 11898093 (-) True G60905
TU81611 lncRNA downstream 84948 11816401 ~ 11816702 (-) True G60867
TU81610 lncRNA downstream 91010 11810310 ~ 11810640 (-) True G60866
TU81603 lncRNA downstream 112543 11787766 ~ 11789107 (-) False G60862
TU81709 lncRNA upstream 82410 12144056 ~ 12157352 (-) True G60955
TU81794 lncRNA upstream 466158 12527804 ~ 12550209 (-) False LOC120561038
TU81832 lncRNA upstream 542159 12603805 ~ 12604426 (-) True G61051
TU81869 lncRNA upstream 582400 12644046 ~ 12644532 (-) True G61083
TU81870 lncRNA upstream 583082 12644728 ~ 12644952 (-) True G61084
XM_039802867.1 mRNA downstream 185702 11641802 ~ 11715948 (-) True niban2b
XM_039802866.1 mRNA downstream 262212 11608619 ~ 11639438 (-) False npdc1b
XM_039802865.1 mRNA downstream 262212 11608619 ~ 11639438 (-) True npdc1b
XM_039804289.1 mRNA downstream 546744 11351854 ~ 11354906 (-) True LOC120561251
XM_039802656.1 mRNA upstream 19853 12081499 ~ 12116241 (-) True noxa1
XM_039802655.1 mRNA upstream 96987 12158633 ~ 12220357 (-) False man1b1b
XM_039802653.1 mRNA upstream 96987 12158633 ~ 12220356 (-) False man1b1b
XM_039802651.1 mRNA upstream 96987 12158633 ~ 12220356 (-) False man1b1b
XM_039802654.1 mRNA upstream 96987 12158633 ~ 12220356 (-) False man1b1b
TU81433 other downstream 711909 11189142 ~ 11189741 (-) True G60715
TU80745 other downstream 3499084 8401022 ~ 8402566 (-) True G60145
TU80531 other downstream 4014247 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 4317131 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_243 other downstream 4390359 7511221 ~ 7511291 (-) True trnag-ccc
TU82089 other upstream 1527393 13589039 ~ 13589332 (-) True G61264
unassigned_transcript_252 other upstream 2877329 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 2882850 14944496 ~ 14944568 (-) True trnaa-agc_15
unassigned_transcript_254 other upstream 2887113 14948759 ~ 14948830 (-) True trnae-cuc_15
unassigned_transcript_255 other upstream 2889856 14951502 ~ 14951583 (-) True trnas-gcu

Expression Profile