RNA id: TU81794


Basic Information

Item Value
RNA id TU81794
length 965
lncRNA type sense_over
GC content 0.43
exon number 3
gene id LOC120561038
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 12293707 ~ 12555285 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCATTTGAGTACATGATCCTGGCCACCATTATTGCCAACTGCATTGTGCTGGCCTTGGAGCAACACCTACCGGCGTCAGACAAAACACCAATGTCAGAGCGTTTGGACGACACAGAGCCCTATTTTATCGGAATATTTTGTTTTGAGGCTGGCATCAAGATCATCGCCCTGGGCTTTGCCTTTCACAAAGGCACCTATCTGCGTAATGGCTGGAATGTAATGGACTTTGTGGTGGTCCTAACAGGACCCTGACTTCCTCCCTTTGTGTGAATTTCCCGCCATTAAGATTTTCTACCCCGCCCCTCATGTATAAATAGTCCTTGTCTCCTTTGTCTTGTGCCAGTTTGTCTTGTTCAGTCTGAATCATAGTCTTTGTcgctgcccgatgtgagtcaaGCGCAGATTTGAGTCGACAAGTAGCctccaagatgctaacggcttttGGAGCTAACGCACAGTctatgagctaacgttagcaatcaaacaatcctAGCTAAAACGTTTCTgaaatgactgctgctgctggctacaagttagcaatcaaacacaacaaaggctgtcacttgaatggccttttgagctaacgttagcaatcaaacaatcgtagatagctaaaatgtttttgaaattatttccatcttctgttattgtatgtaaagagaaacatttattattttatggatttcacaaatttcagtaagacgtTATGcagtaaaccgtttaaatctgggCATGCactctgcactcgactcacatcgggcagtgacgtCTCGTCCAACATCGCAGCCAGGTTTCTGTTACCAGCTTTTGTTTGTAATTATCTGTTCCTCCAAAGTGagagtttttctttgtttgaacttTGACCCTGATTGTGATTGTTGTAGCTCTACCCAGTAAACTACTTTTTTATACCTACTATTGTTTGAGAGTCGTGCATTTGAGTCCACCAGTCTCGTGTCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81709 lncRNA downstream 370452 12144056 ~ 12157352 (-) True G60955
TU81656 lncRNA downstream 466189 12061318 ~ 12061615 (-) False LOC120561001
TU81664 lncRNA downstream 529526 11998058 ~ 11998278 (-) True G60914
TU81663 lncRNA downstream 540935 11986620 ~ 11986869 (-) True G60913
TU81661 lncRNA downstream 544693 11982891 ~ 11983111 (-) True G60911
TU81832 lncRNA upstream 53596 12603805 ~ 12604426 (-) True G61051
TU81869 lncRNA upstream 93837 12644046 ~ 12644532 (-) True G61083
TU81870 lncRNA upstream 94519 12644728 ~ 12644952 (-) True G61084
TU81871 lncRNA upstream 96157 12646366 ~ 12646567 (-) True G61085
TU81922 lncRNA upstream 236754 12786963 ~ 12788320 (-) True G61124
XM_039803111.1 mRNA downstream 234016 12253167 ~ 12293788 (-) True LOC120560512
XM_039802655.1 mRNA downstream 307447 12158633 ~ 12220357 (-) False man1b1b
XM_039802653.1 mRNA downstream 307448 12158633 ~ 12220356 (-) False man1b1b
XM_039802651.1 mRNA downstream 307448 12158633 ~ 12220356 (-) False man1b1b
XM_039802654.1 mRNA downstream 307448 12158633 ~ 12220356 (-) False man1b1b
XM_039803113.1 mRNA upstream 7358 12557567 ~ 12600992 (-) True ehmt1a
XM_039804145.1 mRNA upstream 60207 12610416 ~ 12635123 (-) True arrdc1a
XM_039804115.1 mRNA upstream 91646 12641855 ~ 12643156 (-) True LOC120561146
XM_039804465.1 mRNA upstream 102409 12652618 ~ 12669126 (-) True nelfb
XM_039804527.1 mRNA upstream 123488 12673697 ~ 12692346 (-) True LOC120561416
TU81433 other downstream 1338063 11189142 ~ 11189741 (-) True G60715
TU80745 other downstream 4125238 8401022 ~ 8402566 (-) True G60145
TU80531 other downstream 4640401 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 4943285 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_243 other downstream 5016513 7511221 ~ 7511291 (-) True trnag-ccc
TU82089 other upstream 1038830 13589039 ~ 13589332 (-) True G61264
unassigned_transcript_252 other upstream 2388766 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 2394287 14944496 ~ 14944568 (-) True trnaa-agc_15
unassigned_transcript_254 other upstream 2398550 14948759 ~ 14948830 (-) True trnae-cuc_15
unassigned_transcript_255 other upstream 2401293 14951502 ~ 14951583 (-) True trnas-gcu

Expression Profile