RNA id: TU81877


Basic Information

Item Value
RNA id TU81877
length 396
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G61091
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 12679709 ~ 12682068 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATGATTTTACACGCGAGCGCCAAAAGCGGAACTAATGTGCGACGCAACGTTCCACACGGGTAAATTAGAGCGGCGCACCCAAACACTGTAGCCTGCCTTCCACGCCCACATGTGGTGCTGCTCGTTGAATGAGACACTACTCTTGGAGAGAGGAGCTCCGATTTCTCCTGTTGCAAGAGTCGAAGATATCAGCAAGTCCAAGAATGATGTACCAGTACAGCCCAACTTGAATATATTCCCAACCATTTTGATGGGGGACAGAAGACGGAGCTTCAGGCCAAACTGGTCTAATCTTCATCCATGGCTCGAGTATTCTGTCATGATGGACTCTACATATTCCTATGCATGTAgacgtttttaattttttattgccCTACCTCTCTTGCACCTGCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81853 lncRNA upstream 40849 12638608 ~ 12638860 (+) True G61067
TU81834 lncRNA upstream 70251 12609104 ~ 12609458 (+) True G61053
TU81833 lncRNA upstream 71652 12607644 ~ 12608057 (+) True G61052
TU81831 lncRNA upstream 75499 12603756 ~ 12604210 (+) True G61050
TU81651 lncRNA upstream 690976 11988167 ~ 11988733 (+) True G60901
TU81962 lncRNA downstream 317391 12999459 ~ 12999887 (+) True G61160
TU81973 lncRNA downstream 488725 13170793 ~ 13180491 (+) False LOC120560904
TU82004 lncRNA downstream 499514 13181582 ~ 13182257 (+) False G61192
TU82005 lncRNA downstream 499514 13181582 ~ 13182308 (+) True G61192
TU82008 lncRNA downstream 500551 13182619 ~ 13184450 (+) True G61194
XM_039804008.1 mRNA upstream 178159 12474081 ~ 12501550 (+) True LOC120561040
XM_039804006.1 mRNA upstream 193943 12474173 ~ 12485766 (+) True LOC120561039
XM_039802658.1 mRNA upstream 521011 12121425 ~ 12158698 (+) True dpp7
XM_039804630.1 mRNA upstream 831569 11838184 ~ 11848140 (+) False LOC120561470
XM_039803770.1 mRNA downstream 58798 12740866 ~ 12748536 (+) True fgf17
XM_039803771.1 mRNA downstream 58798 12740866 ~ 12748536 (+) False fgf17
XM_039802808.1 mRNA downstream 70442 12752510 ~ 12794431 (+) False fkbp15b
XM_039802810.1 mRNA downstream 72631 12754699 ~ 12794431 (+) False fkbp15b
XM_039802807.1 mRNA downstream 72632 12754700 ~ 12794431 (+) False fkbp15b
TU81647 other upstream 753108 11926183 ~ 11926601 (+) True G60897
XR_005639564.1 other upstream 1927269 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 1927269 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 1927269 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 1932761 10726446 ~ 10746948 (+) False LOC120561142
TU81938 other downstream 239079 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 239079 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 1425415 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 1459374 14141442 ~ 14142050 (+) True G61338
TU82219 other downstream 1601349 14283417 ~ 14283871 (+) True G61383

Expression Profile