RNA id: TU81956



Basic Information


Item Value
RNA id TU81956
length 278
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G61154
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 12977752 ~ 12978029 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


aataagacaacacgtgcaaataagacaacacgcactaataagacaacacgtgcaaataagacaacacgtgcaaataagacaacacgcactaataagacaacacgtgcaaataagacaacacgcactaataagacaacacgcactaataagacaacacgtgcaaataagacaacacgcactaataagacaacacgtgcaaataagacaacacgcactaataagacaacacgtgcaaataagacaacacgtgcaaataagacaacacgcactaataagac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81953 lncRNA downstream 2606 12974889 ~ 12975146 (-) True G61151
TU81914 lncRNA downstream 103136 12836649 ~ 12874616 (-) True G61119
TU81927 lncRNA downstream 131466 12837971 ~ 12846286 (-) True G61128
TU81922 lncRNA downstream 189432 12786963 ~ 12788320 (-) True G61124
TU81871 lncRNA downstream 331185 12646366 ~ 12646567 (-) True G61085
TU81963 lncRNA upstream 29217 13007246 ~ 13007459 (-) True G61161
TU82006 lncRNA upstream 203558 13181587 ~ 13182319 (-) True G61193
TU82013 lncRNA upstream 204561 13182590 ~ 13184478 (-) True G61195
TU82023 lncRNA upstream 299164 13277193 ~ 13277633 (-) True G61205
XR_005639421.1 lncRNA upstream 348547 13326576 ~ 13327712 (-) True LOC120560090
XM_039804293.1 mRNA downstream 29397 12944844 ~ 12948355 (-) True LOC120561256
XM_039803767.1 mRNA downstream 54047 12921169 ~ 12923705 (-) True tubb2b
XM_039804527.1 mRNA downstream 285406 12673697 ~ 12692346 (-) True LOC120561416
XM_039804528.1 mRNA downstream 289280 12673697 ~ 12688472 (-) False LOC120561416
XM_039804465.1 mRNA downstream 308626 12652618 ~ 12669126 (-) True nelfb
XM_039804296.1 mRNA upstream 47386 13025415 ~ 13031917 (-) True LOC120561258
XM_039804297.1 mRNA upstream 58799 13036828 ~ 13038447 (-) True LOC120561259
XM_039803114.1 mRNA upstream 81461 13059490 ~ 13060793 (-) True LOC120560514
XM_039804294.1 mRNA upstream 106454 13084483 ~ 13094496 (-) True LOC120561257
XM_039804377.1 mRNA upstream 671863 13649892 ~ 13686906 (-) False LOC120561314
TU81433 other downstream 1788011 11189142 ~ 11189741 (-) True G60715
TU80745 other downstream 4575186 8401022 ~ 8402566 (-) True G60145
TU80531 other downstream 5090349 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 5393233 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_243 other downstream 5466461 7511221 ~ 7511291 (-) True trnag-ccc
TU82089 other upstream 611010 13589039 ~ 13589332 (-) True G61264
unassigned_transcript_252 other upstream 1960946 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 1966467 14944496 ~ 14944568 (-) True trnaa-agc_15
unassigned_transcript_254 other upstream 1970730 14948759 ~ 14948830 (-) True trnae-cuc_15
unassigned_transcript_255 other upstream 1973473 14951502 ~ 14951583 (-) True trnas-gcu

Expression Profile