RNA id: TU82005


Basic Information

Item Value
RNA id TU82005
length 727
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G61192
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 13181582 ~ 13182308 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaacaccgagcataaacacagccgtgaattagtgtgtaatgtagaatggtcggcatttaacagtcacaaactccaccagcagttagcagttaaatggatacaaatcaccacatttctgcaccactcggtgttaacacagcccacctcttttacccggcgacagagcatctctagctcggagggctagcaggcttggtagctggacagtccggtacactattcaggcatgtttccacaacaaaaacacaaagtctctgaactcacgttgggagtgtcgttgaagttggatgtagtccagtttgtggtctaaatgagcggacacttgcaagcaggatccgtaagttcagctaacgcatactagcattggtgtagctaaacacggagtataaacacagcgtgaattagcgtggaatgtcgaatggtcggcatttaacagtcacaagctccatcagcagttagcagtagctagttggattttatttctacaccagtccacctccacgggccggtgagagcagcctggtagctggatagtcccggttccggtacactgttgttcaggcatgtttccacaacaacaaaaacacagcagtcactgaactcacgttgggagtttcgttgtaggaggatgtagtccagcttgttgtttaatgagcagacacttgcaagcaggatggctgggacaggtggacagctagcgttagctttccacctagccgatgagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81973 lncRNA upstream 1091 13170793 ~ 13180491 (+) False LOC120560904
TU81962 lncRNA upstream 181695 12999459 ~ 12999887 (+) True G61160
TU81877 lncRNA upstream 499514 12679709 ~ 12682068 (+) True G61091
TU81853 lncRNA upstream 542722 12638608 ~ 12638860 (+) True G61067
TU81834 lncRNA upstream 572124 12609104 ~ 12609458 (+) True G61053
TU82008 lncRNA downstream 311 13182619 ~ 13184450 (+) True G61194
TU82051 lncRNA downstream 242443 13424751 ~ 13424951 (+) True G61232
TU82069 lncRNA downstream 464989 13647297 ~ 13651464 (+) True G61244
TU82079 lncRNA downstream 496959 13679267 ~ 13679593 (+) True G61254
TU82080 lncRNA downstream 497905 13680213 ~ 13680865 (+) True G61255
XM_039803795.1 mRNA upstream 1213 13132098 ~ 13180369 (+) True LOC120560904
XM_039803769.1 mRNA upstream 248583 12909814 ~ 12932999 (+) False bcl2l16
XM_039803768.1 mRNA upstream 261111 12909814 ~ 12920471 (+) True bcl2l16
XM_039804579.1 mRNA upstream 316330 12860590 ~ 12865252 (+) True si:dkey-90l8.3
XM_039802812.1 mRNA upstream 343675 12831516 ~ 12837907 (+) False ccn1l2
XM_039804576.1 mRNA downstream 166833 13349141 ~ 13366210 (+) False lhx2b
XM_039804575.1 mRNA downstream 166834 13349142 ~ 13366210 (+) True lhx2b
XM_039804373.1 mRNA downstream 385251 13567559 ~ 13646350 (+) True adgrd2
XM_039804374.1 mRNA downstream 385251 13567559 ~ 13645504 (+) False adgrd2
XM_039804375.1 mRNA downstream 687374 13869682 ~ 13902649 (+) True LOC120561313
TU81938 other upstream 257746 12921147 ~ 12923836 (+) False G61139
TU81939 other upstream 257746 12921147 ~ 12923836 (+) True G61139
TU81647 other upstream 1254981 11926183 ~ 11926601 (+) True G60897
XR_005639563.1 other upstream 2429142 10748116 ~ 10752440 (+) False LOC120561144
TU82171 other downstream 925175 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 959134 14141442 ~ 14142050 (+) True G61338
TU82219 other downstream 1101109 14283417 ~ 14283871 (+) True G61383
TU82226 other downstream 1135231 14317539 ~ 14319506 (+) True G61390
TU82227 other downstream 1135231 14317539 ~ 14319506 (+) False G61390

Expression Profile