RNA id: TU82008


Basic Information

Item Value
RNA id TU82008
length 1832
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G61194
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 13182619 ~ 13184450 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcctactactggttgtagtcctttgcctctggcccaaaaatcttccaatgacgcaaaaatcgtcattttacgtcatcggaagatttttttccaggccccaaatgcagaaatctctcgtctcagggggacatgagggagggaggcacggtcattcagaaatactatcgggtttctactgatacaaagctgaatgctaaatcggtgaagtatccctttaaacacCGAATCTGAGCCAGAAGTGATCACCAAACATCGGTGTTGGACCTCACTAATGCTCTTAAACGGGAGCAAATGCCTGCAGCCAGGTTCCAAAATCGTCCGGAAAGCCTGAAATCATAGTGGATGCTGGTAGAGTAGCACATCGATGTCCATAGTTTTAGAATGAAGAATATTCAGCAGTTAGATATTGGGGTAGTCTATattcacgacgttccacttccggcaTTGCTCCgctggatgtccttcttttcggccgtATGtcagaattttaaactctgttgGATTTAtttaggactatggttaactgctcctcagatctctgcagggtaaatccagagagATAGCTAGGCTACTAAAACAACATtagaacgtacacgttccactaaaagttccttcccgaggctattttgcagcggcagattggtttaaagaaataccaataaaccagagcacatttttctcccatcctggaatgctatgtggactagccagaccctcctctgcaacGTTgtaaaggaaggtctggcaatgcaagactaacaTGGGTGTAATGTTCACATACTTCTGGCCATGAATTGCATGTGTATGGAGGTTAAAAAGTTAAGAATTATCTGATATATCATCATCTTTTTGAGGAAGATCTGCTTGGGGTCAGCTCTCCAGCATCAGACCTGGGCTCCGAGTCTCTACACTAGAGGTCTTCTGAAACAGACTCATGGAAACCTGCCCAAACCTGACTTAAGTTAACTTTTGAAAAAGAGAGACCCAGTCCGACGGGACTGATGTTCTCAAATATTTTCTCCCATGGTGATTAGGGCATACAGATTCATTCATATACTAgacatattgacacagagcagTGACAGTAAAATTAAACCCTTTCCAACCCGATCATATTTTGGACCTGGTCCAACTTTGTTCCTGGGTAAGGTCCCTGTTCCTCAGAGTTGATTGGACCCGTAAAAAAACCTTCTCTACATCCAACTCAACTCACTCCCCAGTTAATTTATTATATGGTTATTGTTTGTAATCCATGAAACACAAGAATGCTGTCTTACGCTACTTATTCAGGCAGTGAAAGCCTTTGTGTGGACTGTATTTTAAAGGAGAGGACACTGACAGAAACCTCAATGTGAGAAGTGTGCAGGGATGCAGCTCTGctcaaatattaaaatgttgttaAAAGCATCATGGTATTGTACAGACATGCAGTGCTGTGAATTTACAACAGAACATACACAGGAAGTGTCCCGGATAGGTACAAAATGGTAGTGATTTTACACTGGAGTTGTTTTACTAAAGCTGTACCATGTACAGCACACTGTACATCAGTACATGAAGAGTTCTATTCCAAAATATTACATATTCATGTTAGGAAATAAACAGGATTCAGTTTGTGAGTGATACTAATGGGTCAACCCAAGACTTGTACTGTAATTCACTCACTAGACACCCCTGTTTTTTCAAAGTGAGTATCTCATTTTGATATAAAACTCTTTATTTGTACTCAGTATGTGTATATGAGGAGGATTTGATGGTTTATGGTCATTTTGTGCATTTAGTTGGAAATGTTGCTACGTTGGCTGGTACGTGTCTTAAACAGTGTTcaagga

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82005 lncRNA upstream 311 13181582 ~ 13182308 (+) True G61192
TU82004 lncRNA upstream 362 13181582 ~ 13182257 (+) False G61192
TU81973 lncRNA upstream 2128 13170793 ~ 13180491 (+) False LOC120560904
TU81962 lncRNA upstream 182732 12999459 ~ 12999887 (+) True G61160
TU81877 lncRNA upstream 500551 12679709 ~ 12682068 (+) True G61091
TU82051 lncRNA downstream 240301 13424751 ~ 13424951 (+) True G61232
TU82069 lncRNA downstream 462847 13647297 ~ 13651464 (+) True G61244
TU82079 lncRNA downstream 494817 13679267 ~ 13679593 (+) True G61254
TU82080 lncRNA downstream 495763 13680213 ~ 13680865 (+) True G61255
TU82083 lncRNA downstream 499546 13683996 ~ 13684206 (+) True G61258
XM_039803795.1 mRNA upstream 2250 13132098 ~ 13180369 (+) True LOC120560904
XM_039803769.1 mRNA upstream 249620 12909814 ~ 12932999 (+) False bcl2l16
XM_039803768.1 mRNA upstream 262148 12909814 ~ 12920471 (+) True bcl2l16
XM_039804579.1 mRNA upstream 317367 12860590 ~ 12865252 (+) True si:dkey-90l8.3
XM_039802812.1 mRNA upstream 344712 12831516 ~ 12837907 (+) False ccn1l2
XM_039804576.1 mRNA downstream 164691 13349141 ~ 13366210 (+) False lhx2b
XM_039804575.1 mRNA downstream 164692 13349142 ~ 13366210 (+) True lhx2b
XM_039804373.1 mRNA downstream 383109 13567559 ~ 13646350 (+) True adgrd2
XM_039804374.1 mRNA downstream 383109 13567559 ~ 13645504 (+) False adgrd2
XM_039804375.1 mRNA downstream 685232 13869682 ~ 13902649 (+) True LOC120561313
TU81938 other upstream 258783 12921147 ~ 12923836 (+) False G61139
TU81939 other upstream 258783 12921147 ~ 12923836 (+) True G61139
TU81647 other upstream 1256018 11926183 ~ 11926601 (+) True G60897
XR_005639563.1 other upstream 2430179 10748116 ~ 10752440 (+) False LOC120561144
TU82171 other downstream 923033 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 956992 14141442 ~ 14142050 (+) True G61338
TU82219 other downstream 1098967 14283417 ~ 14283871 (+) True G61383
TU82226 other downstream 1133089 14317539 ~ 14319506 (+) True G61390
TU82227 other downstream 1133089 14317539 ~ 14319506 (+) False G61390

Expression Profile