RNA id: TU82023


Basic Information

Item Value
RNA id TU82023
length 441
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G61205
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 13277193 ~ 13277633 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTCCTCCGCTCTGCTGTTTGGAGTGTGTGTGCTGGGCCCAGGCCTGTGATTTACCTGCTGTCCCTGGCTTTAACACACCCCATATGGTGAACAATGGCCAATAAAGAAGGCTCTAAGCGAGGCAGGAATTAGCTCAGCTCAGCTCTGTTTATAGCACAGATCCTGACTCTGTTGGCTTCACTGATTGGACTGCACAGTTCTTAGACTGCAAGCAGATCAACTGCTCTTTTCACATTATATGATCATACAACAAACTTAAATTCCTATTTCTtgctaggcctgtaacaattccaaattttgctgtacaaatgaattgtctcagaaataattgcgattaatatgagtgtctctttcagtcaaatttgatTTGCTTAGATCacgtcatgtgacccagataatgtagtaacacaaacacattacctGTGAAGTAAACCACgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82013 lncRNA downstream 92715 13182590 ~ 13184478 (-) True G61195
TU82006 lncRNA downstream 94874 13181587 ~ 13182319 (-) True G61193
TU81963 lncRNA downstream 269734 13007246 ~ 13007459 (-) True G61161
TU81956 lncRNA downstream 299164 12977752 ~ 12978029 (-) True G61154
TU81953 lncRNA downstream 302047 12974889 ~ 12975146 (-) True G61151
XR_005639421.1 lncRNA upstream 48943 13326576 ~ 13327712 (-) True LOC120560090
XR_005639592.1 lncRNA upstream 109843 13387476 ~ 13390549 (-) True LOC120561378
TU82048 lncRNA upstream 127814 13405447 ~ 13406754 (-) True G61229
XR_005639414.1 lncRNA upstream 137436 13415069 ~ 13431734 (-) True LOC120560059
TU82068 lncRNA upstream 286581 13564214 ~ 13564563 (-) True G61243
XM_039804294.1 mRNA downstream 182697 13084483 ~ 13094496 (-) True LOC120561257
XM_039803114.1 mRNA downstream 216400 13059490 ~ 13060793 (-) True LOC120560514
XM_039804297.1 mRNA downstream 238746 13036828 ~ 13038447 (-) True LOC120561259
XM_039804296.1 mRNA downstream 245276 13025415 ~ 13031917 (-) True LOC120561258
XM_039804293.1 mRNA downstream 328838 12944844 ~ 12948355 (-) True LOC120561256
XM_039804377.1 mRNA upstream 372259 13649892 ~ 13686906 (-) False LOC120561314
XM_039804376.1 mRNA upstream 372259 13649892 ~ 13686906 (-) True LOC120561314
XM_039804378.1 mRNA upstream 462720 13740353 ~ 13864440 (-) True nr6a1a
XM_039804379.1 mRNA upstream 462720 13740353 ~ 13776219 (-) False nr6a1a
XM_039804380.1 mRNA upstream 462720 13740353 ~ 13773378 (-) False nr6a1a
TU81433 other downstream 2087452 11189142 ~ 11189741 (-) True G60715
TU80745 other downstream 4874627 8401022 ~ 8402566 (-) True G60145
TU80531 other downstream 5389790 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 5692674 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_243 other downstream 5765902 7511221 ~ 7511291 (-) True trnag-ccc
TU82089 other upstream 311406 13589039 ~ 13589332 (-) True G61264
unassigned_transcript_252 other upstream 1661342 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 1666863 14944496 ~ 14944568 (-) True trnaa-agc_15
unassigned_transcript_254 other upstream 1671126 14948759 ~ 14948830 (-) True trnae-cuc_15
unassigned_transcript_255 other upstream 1673869 14951502 ~ 14951583 (-) True trnas-gcu

Expression Profile