RNA id: TU82096


Basic Information

Item Value
RNA id TU82096
length 1930
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G61271
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 13645392 ~ 13647321 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAATTCCAGTGAAGTAATGCTCCACTTGTGTGTCGGCTATTATTTCAACAACATTCATCAGTTGTGCACAAATGATACAGAGCTCATATATACAAGATTCATTACAGCAGTCATTGTGCGGCTGTTATTTAGCCTTAGTCTGACTTAGAAACATTATTCACATCAGTTACATTCTAAAACACTAAACATCAGTTTTACAAACAAATCCTTATGGAAAGTCATCATTCAATCAGTCTTACTGTGACATCTGTCATTTTGCCATTaaagagtttttttatttttattttttttattgttttcatatGTGATTACATGCGAGTGATTACATTTCATAGCGGAACAAAAGTTCTTAGAGGGAAATTGATTTGTTCCTCAAATGTCCAGCTACAAAATGTCTAAATGTAGAACGTGTCGATCATGTTGAAGAATACGGCACGATGTCTGACAACTAAAGGCGAGGGGACGTTTTGGGCAAAAAAGGGGGTGGTTCAAGTGGTAACACAGAAATGAATAAAATGGGATGAAAATCCTTGGTTGCTGCTGTTATTTATCATTACTCTACGGTTTAAGATCAGTGGCTGATCGAATAGTTTTCAAATGGTCTTTTTCAATGCACTTGACTCACATGCGCTATGTGGGGATAGCACCACGCGCACAATGTCAAGGAAAACTACATTACCCATGTCCACAGCCTTTAGCAATTTGATGCCAAGTTCTctgcgctgcggaggagggtctggctagtccacacagcattccgggatgggagagaaacgggctctgttttttttgggcatttctttaaaccaatcacaatcttcttgggcggcgctaagcaccggacggagcaatggtgcctctgcaaaatagcctcaggaaggaacgtttgtacgttcaaaagttgttttagtcgtgcgacggaaaactcagattggacagatagtctagctagctgtctggatttaccctgcagagatctgaggagcagttaaccatagtcctcagaaatacaccggaggttagaacgccaacacaaagaaagaggaaggtagcCGAAAAAGAGtgaaatgtgtcattttaattGGCGATCAAAAACACACATCAAATGCAATGTGATGCATTTGTACACGTTGACTGCTGATTTCCtagccctccttcccttcccccTAAGTGACTTTATCACTTATCAGGCCGCCTTTGGAAATAATAATCTCAATTTAATGACATGGTAAaaggtaaaggtaaaaaaaaaggagttgaGGGAAAATGATCTGATCTAACGACAGTGTGAGAGAAGGTGGCGCGGGCTTCTTCATCCTTCCTTCATGCTTATTTTATTCTGCCCTCTCCCTCCCAGCAgagacccgttctcactcccaactcgtgaaatcctgacgcttggtcagtggctctcagcgtcagataccgacgcatgAATCCCCCTTTTTAGCGTCTGTACGGGGCAGAGCAGTAGCTCGACAGCGGCGCGAGCGAGTAGTAAGAAAGTCCGCGTAAGGGAAGCAGGTTGGGGTGGCGACTAacaaaacaggactttcacccaggagacctgaatcgtacattttgtaatcccacccacgatcttttcctgaatctaaccgtcccgttcttgtgccgcatgtcagttaaacggaCGTCCCGACCCacagcgtcaaaaagtgacgccaagagtcccgaccaagcgtgtcaataacaaacgccaaaatGTCGCTTTTTGATGCAATTGGAGTGTGAATGTGTTGCaacgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgtgtcggCAGTGCACTTCTTAAGGTGggatctgtgtctgtgtccagcTCTCCATTCTTTTTCAGCGGGATGCGTGCGTATTGTAGCCAAGTATCAGGATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82068 lncRNA downstream 80829 13564214 ~ 13564563 (-) True G61243
XR_005639414.1 lncRNA downstream 213658 13415069 ~ 13431734 (-) True LOC120560059
TU82048 lncRNA downstream 238638 13405447 ~ 13406754 (-) True G61229
XR_005639592.1 lncRNA downstream 254843 13387476 ~ 13390549 (-) True LOC120561378
XR_005639421.1 lncRNA downstream 317680 13326576 ~ 13327712 (-) True LOC120560090
TU82098 lncRNA upstream 22500 13669821 ~ 13670069 (-) True G61273
TU82099 lncRNA upstream 31918 13679239 ~ 13679453 (-) True G61274
TU82130 lncRNA upstream 169579 13816900 ~ 13817523 (-) True G61301
TU82131 lncRNA upstream 172189 13819510 ~ 13819728 (-) True G61302
TU82133 lncRNA upstream 208920 13856241 ~ 13856771 (-) True G61304
XM_039804294.1 mRNA downstream 550896 13084483 ~ 13094496 (-) True LOC120561257
XM_039803114.1 mRNA downstream 584599 13059490 ~ 13060793 (-) True LOC120560514
XM_039804297.1 mRNA downstream 606945 13036828 ~ 13038447 (-) True LOC120561259
XM_039804296.1 mRNA downstream 613475 13025415 ~ 13031917 (-) True LOC120561258
XM_039804293.1 mRNA downstream 697037 12944844 ~ 12948355 (-) True LOC120561256
XM_039804377.1 mRNA upstream 2571 13649892 ~ 13686906 (-) False LOC120561314
XM_039804376.1 mRNA upstream 2571 13649892 ~ 13686906 (-) True LOC120561314
XM_039804378.1 mRNA upstream 93032 13740353 ~ 13864440 (-) True nr6a1a
XM_039804379.1 mRNA upstream 93032 13740353 ~ 13776219 (-) False nr6a1a
XM_039804380.1 mRNA upstream 93032 13740353 ~ 13773378 (-) False nr6a1a
TU82089 other downstream 56060 13589039 ~ 13589332 (-) True G61264
TU81433 other downstream 2455651 11189142 ~ 11189741 (-) True G60715
TU80745 other downstream 5242826 8401022 ~ 8402566 (-) True G60145
TU80531 other downstream 5757989 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 6060873 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_252 other upstream 1291654 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 1297175 14944496 ~ 14944568 (-) True trnaa-agc_15
unassigned_transcript_254 other upstream 1301438 14948759 ~ 14948830 (-) True trnae-cuc_15
unassigned_transcript_255 other upstream 1304181 14951502 ~ 14951583 (-) True trnas-gcu
unassigned_transcript_256 other upstream 1320358 14967679 ~ 14967760 (-) True trnas-gcu_1

Expression Profile