RNA id: XR_005639594.1


Basic Information

Item Value
RNA id XR_005639594.1
length 1011
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id LOC120561401
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14755450 ~ 14762549 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAGGTTGGAGCAGGCAGCTGCAGctccgccccccccccaaaagacTGATAGAGGACAGGACGCCTCCATGCATTCACCCACCTCCACCGCTGCTCAACACATCGCCGACCAACCAGCTGACCTTCAGTCTCCACTGGTTTGATTGGCCGAAGCACGTGGAGCAACAGGTGTTTCAccaactgaagaagaagaagaggtaaAGGAAGGAACCAACAAAGGAGAGCACTGAAAGAAGCCAatctaaacaaaaaaacacccctAGGAACTTCAGTACCTTGAGGAGGATGTCTTCATCTCAGAAAAGATCTGGACACAAACCATCTGGACTTAAACGTTTCTGTTTGTGGCTCCACCGCTGCTCCtcacccccccctcctccccctcctcttcctctccctgtcAGCTGTGGCGTCCCCGACTCTCCGCCGGTGTCTTGtcgtctccccctgctggttgtcctGCTGctctgcagtctgctgctgatgctgctgatTCTGCTGTGGAATTACCactgtttgttcatctcccaCATCTGCTCCCAACagggggaggaaggggaggaggggggacgGAGGGCCATGGCCCCCTGGCGGTGACAGTGGCACCACCCACCTCCTGAAACCAGTCCTGCAGAAACCACAAATAAAGATGATTTTGGCCGGGGGTTAGTTCCGATTTTAGAATATTTTGCTTCATCTACAAACATTTCTTATCGTAAACAAGAACTACAGGATATTAAAAGAGGTGAAAATTGGGTTGTTCTCAAGACTGCTCACTGCTGCAATGTTAGTATTTCACTTCTAGTTGTTGTGAGATTGAAAAGACTTTTAGCCCAAAAatctggatcctacatttccaaTGATGCAACTGGACAGCGTCTTTCAGTAGAGCCTCATAGACTGACGACATCATTATGACATCATCTGCGTTATCAGAGACAGTGTAAAAATGTGTGCAATTCTCCTTTAACATTGTTAGAATTTACCATAATAAAAGCTCCCTGATTGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82398 lncRNA upstream 1394 14699525 ~ 14754056 (+) True G61514
TU82392 lncRNA upstream 78078 14676137 ~ 14677372 (+) True G61513
TU82340 lncRNA upstream 256016 14499180 ~ 14499434 (+) True G61468
XR_005639539.1 lncRNA upstream 256393 14497781 ~ 14499057 (+) True LOC120560938
TU82458 lncRNA downstream 263946 15026441 ~ 15027400 (+) True G61539
TU82459 lncRNA downstream 265110 15027605 ~ 15027818 (+) True G61540
TU82698 lncRNA downstream 383605 15146100 ~ 15152551 (+) True G61730
TU82731 lncRNA downstream 460627 15223122 ~ 15224015 (+) False nudt18
TU82732 lncRNA downstream 461619 15224114 ~ 15224465 (+) True G61756
XM_039802857.1 mRNA upstream 2050 14677671 ~ 14753400 (+) True grin1b
XM_039802858.1 mRNA upstream 2050 14677671 ~ 14753400 (+) False grin1b
XM_039802860.1 mRNA upstream 2050 14677672 ~ 14753400 (+) False grin1b
XM_039802861.1 mRNA upstream 2050 14677672 ~ 14753400 (+) False grin1b
XM_039804189.1 mRNA upstream 89185 14646727 ~ 14666265 (+) True LOC120561189
XM_039804510.1 mRNA downstream 5221 14767716 ~ 14772152 (+) True kazald3
XM_039803938.1 mRNA downstream 19203 14781698 ~ 14795943 (+) True surf4l
XM_039802194.1 mRNA downstream 79576 14842071 ~ 14867655 (+) True LOC120560087
XM_039802198.1 mRNA downstream 79576 14842071 ~ 14867655 (+) False LOC120560087
XM_039802196.1 mRNA downstream 79576 14842071 ~ 14867655 (+) False LOC120560087
TU82322 other upstream 320853 14431330 ~ 14434597 (+) True LOC120560925
TU82315 other upstream 362872 14389603 ~ 14392578 (+) True c6h12orf43
TU82226 other upstream 435944 14317539 ~ 14319506 (+) True G61390
TU82227 other upstream 435944 14317539 ~ 14319506 (+) False G61390
TU82219 other upstream 471579 14283417 ~ 14283871 (+) True G61383
XR_005639550.1 other downstream 12018 14774513 ~ 14786109 (+) False surf4l
XR_005639549.1 other downstream 12019 14774514 ~ 14786109 (+) False surf4l
XR_005639552.1 other downstream 12048 14774543 ~ 14786109 (+) False surf4l
XR_005639548.1 other downstream 12049 14774544 ~ 14786109 (+) False surf4l
XR_005639551.1 other downstream 12049 14774544 ~ 14786109 (+) False surf4l

Expression Profile