RNA id: TCONS_00074413


Basic Information

Item Value
RNA id TCONS_00074413
length 720
lncRNA type lincRNA
GC content 0.40
exon number 2
gene id XLOC_037901
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 30217828 ~ 30248034 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGATTTTCATAACAGCCGCTGGGCACGCATATACTTGAAGAGGCAGGGCGCTTCCGCAACAGCAACAACCCCTGAACGCGTTTCAAGAAAAACTGCTGAGAAAGTAACGGATACAGTAAAAATTGTACTTTCTCTTCACCATGGTATGACTTTTGATAAAAGGTAAGAAGGAGCGCAATGCATCAGCTGCTGCATTAATGGAAGCTCCAGAGCCTGAAGGTGCTGCTGGGTCATCTGCTCCGACAGAGACAGCTGTACAGAAATGTGGTTCATGAAGTTAAAGGTCACGCAGAAACAAATCTGAGCACAATAGTGGCCTCCCCACTAAATAAACAGCATCACTAGACAATAGCATATATTGTGTTTTAGATGCTGGTGCTCCAACAAGACCATCTAAGTTTGTTTTGTCTCAGAGATTCTGCAGTAACAATTATATGACAACAGACCAGATTTTCTCTGCGTgaccttttattttttatgtgccGACTCTTATTACTTTAttcttttttcatcttttttccaTTAGCTGTAGTTTGTGAAGGTCTGGTCATCAACCTCTGCCTCAGGGGCGGTTCAGATCTGATGTTTATCTGCAGCTTTTGTGTTTATACTCATCAACTAACTGATTGTACAATGAGTAAAAACCAATTGTTAAATCTGACATTATTTATAAGATCATGTTtgttatggcaaaaataaaaaggtGAAACTTTGGTTC

Function

GO: NA

KEGG:

id description
ko01002 Peptidases and inhibitors
ko04121 Ubiquitin system

Ensembl:

ensembl_id ENSDART00000147241

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074408 lncRNA downstream 55183 30189302 ~ 30190457 (-) True XLOC_037900
TCONS_00074395 lncRNA downstream 538383 29682197 ~ 29707257 (-) True XLOC_037894
TCONS_00075380 lncRNA downstream 559482 29682197 ~ 29686158 (-) False XLOC_037894
TCONS_00074391 lncRNA downstream 583015 29652041 ~ 29662625 (-) False XLOC_037893
TCONS_00075379 lncRNA downstream 583644 29652041 ~ 29661996 (-) False XLOC_037893
TCONS_00074415 lncRNA upstream 1062 30249085 ~ 30255337 (-) False XLOC_037902
TCONS_00074422 lncRNA upstream 23002 30271025 ~ 30271850 (-) True XLOC_037904
TCONS_00075381 lncRNA upstream 210681 30458704 ~ 30474478 (-) True XLOC_037910
TCONS_00074431 lncRNA upstream 242482 30490505 ~ 30503378 (-) False XLOC_037911
TCONS_00074987 lncRNA upstream 269894 30517917 ~ 30525279 (-) True XLOC_037912
TCONS_00074409 mRNA downstream 2247 30217828 ~ 30243393 (-) False XLOC_037901
TCONS_00074410 mRNA downstream 24822 30217830 ~ 30220818 (-) False XLOC_037901
TCONS_00074407 mRNA downstream 55127 30188764 ~ 30190513 (-) False XLOC_037900
TCONS_00074405 mRNA downstream 80019 30132498 ~ 30165621 (-) False XLOC_037899
TCONS_00074406 mRNA downstream 84743 30158597 ~ 30160897 (-) True XLOC_037899
TCONS_00074414 mRNA upstream 548 30248571 ~ 30259512 (-) False XLOC_037902
TCONS_00074416 mRNA upstream 1392 30249415 ~ 30259481 (-) False XLOC_037902
TCONS_00074417 mRNA upstream 3943 30251966 ~ 30259447 (-) False XLOC_037902
TCONS_00074418 mRNA upstream 3946 30251969 ~ 30259295 (-) False XLOC_037902
TCONS_00074419 mRNA upstream 6940 30254963 ~ 30258957 (-) True XLOC_037902
TCONS_00074401 other downstream 137680 30104920 ~ 30107960 (-) False XLOC_037898
TCONS_00074403 other downstream 137707 30106070 ~ 30107933 (-) True XLOC_037898
TCONS_00074402 other downstream 137726 30105442 ~ 30107914 (-) False XLOC_037898
TCONS_00074400 other downstream 191462 30027905 ~ 30054178 (-) True XLOC_037897
TCONS_00074398 other downstream 437576 29807947 ~ 29808064 (-) True XLOC_037896
TCONS_00074423 other upstream 48652 30296675 ~ 30296791 (-) True XLOC_037905
TCONS_00074436 other upstream 429447 30677470 ~ 30680018 (-) True XLOC_037915
TCONS_00074437 other upstream 459816 30707839 ~ 30707954 (-) True XLOC_037916
TCONS_00074442 other upstream 939715 31187738 ~ 31187859 (-) True XLOC_037923
TCONS_00074446 other upstream 1026085 31274108 ~ 31314324 (-) True XLOC_037925

Expression Profile

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