RNA id: TU82649


Basic Information

Item Value
RNA id TU82649
length 458
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G61695
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14965307 ~ 14965785 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacCAACCTGCAGTTCTGTTTGCTGTTGTTTTGTCTCTTTCAGACAgatctctgtctcctttttgtGGGCCTCAACTTTCTGTTGCAGCTCAGCCAATTCTTCAATCTTTCTGTTCACCTCCTCCTTCTTGTTTTCCAGCTCGTCCTTCCTCTTGTCAACTTCATCCCGTGTCCCATCCAACTCATCTCTTTTCTTGTCCCCCTCGACCTGtattctgtccagttcatccttCGCCCTGTCCACCTCGACCTGTATTCTGTCCAGCTGGTCCTGCTTTTTGTGGAGTCGCTGGAGACTCTGAGTGCGTTTGGTTTTCACTACCTCCAGCGCCTGCTGCTCTACAAGTAACTCCTGAAGAACCTGTTTTAgctctggacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82581 lncRNA downstream 97650 14802564 ~ 14867657 (-) True G61631
TU82599 lncRNA downstream 166158 14798920 ~ 14799149 (-) True G61647
TU82547 lncRNA downstream 334334 14629611 ~ 14630973 (-) True G61601
XR_005639534.1 lncRNA downstream 405578 14559086 ~ 14559729 (-) True LOC120560921
XR_005639535.1 lncRNA downstream 408808 14554203 ~ 14556499 (-) True LOC120560922
XR_005639490.1 lncRNA upstream 17682 14983467 ~ 14985185 (-) True LOC120560531
TU82653 lncRNA upstream 27692 14993477 ~ 14993780 (-) True G61699
XR_005639397.1 lncRNA upstream 47811 15013596 ~ 15017816 (-) True LOC120559984
TU82666 lncRNA upstream 60734 15026519 ~ 15027395 (-) True G61706
TU82676 lncRNA upstream 102757 15068542 ~ 15068893 (-) True G61711
XM_039803266.1 mRNA downstream 340110 14600261 ~ 14625197 (-) False tsc1a
XM_039803264.1 mRNA downstream 340110 14600261 ~ 14625197 (-) True tsc1a
XM_039803265.1 mRNA downstream 340771 14600261 ~ 14624536 (-) False tsc1a
XM_039804333.1 mRNA downstream 366165 14582084 ~ 14599142 (-) False ak8
XM_039803153.1 mRNA upstream 23362 14989147 ~ 14991145 (-) True LOC120560533
XM_039804652.1 mRNA upstream 64091 15029876 ~ 15041380 (-) True tti2
XM_039802121.1 mRNA upstream 80097 15045882 ~ 15061352 (-) True LOC120560022
XM_039802120.1 mRNA upstream 80968 15046753 ~ 15064841 (-) False LOC120560022
XM_039803861.1 mRNA upstream 104482 15070267 ~ 15076395 (-) True ppiaa
unassigned_transcript_255 other downstream 13724 14951502 ~ 14951583 (-) True trnas-gcu
unassigned_transcript_254 other downstream 16477 14948759 ~ 14948830 (-) True trnae-cuc_15
unassigned_transcript_253 other downstream 20739 14944496 ~ 14944568 (-) True trnaa-agc_15
unassigned_transcript_252 other downstream 26260 14938975 ~ 14939047 (-) True trnaa-agc_14
TU82089 other downstream 1375975 13589039 ~ 13589332 (-) True G61264
unassigned_transcript_256 other upstream 1894 14967679 ~ 14967760 (-) True trnas-gcu_1
unassigned_transcript_257 other upstream 2294 14968079 ~ 14968160 (-) True trnas-gcu_2
unassigned_transcript_258 other upstream 2711 14968496 ~ 14968577 (-) True trnas-gcu_3
TU82656 other upstream 47748 15013533 ~ 15017713 (-) False LOC120559984
TU82671 other upstream 71194 15036979 ~ 15041364 (-) False tti2

Expression Profile