RNA id: XR_005639397.1


Basic Information

Item Value
RNA id XR_005639397.1
length 1723
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC120559984
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15013533 ~ 15017816 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGCCCTGATCTCATCCCATTTCTTTGTcgtccaatcagagagcaggctaaaagcaataaaacacagataccaAAAAGCTGTCCTCATTAATCTGCagcaaagaaaagaagaagaccaAACATCAAACCGTCATGGCGTTACTAACCTTCATACAGAGTTTGGAAATCAACGATCATGATCTGCAGATGAAATTCGGCAAAAAAATTGTTGTCGTGTCATTCGTTGACCCGACGATGAATTATAAAAGTTACAGTTTACTAGAAATTGTTTACCGTTTACTTAAATCTGTTCGGATCAATGGGGAAATGCTCGGCCGTGTTCTTTTAAAGAAGCTGCTCTCCTTGCTGTATAGAGCCGGTCTGTGGCTAAAGAGGAAATTTCACTGTTTCATACCGAGAGATAAACGGTATCGCAGCCTACACCTTACTACGGAACTACGACATCTCATCGCAAATACCTGCAACGGTGTAGCAGCTGTTCAACCCATTACAAACGAGTTGAAGCGGCGTTACAAACGGGTTGAAGCGGCGTTGCAAACGAGTTGGAGCGGCGTTGCAAACGAGTTGGAGCGGCGTTGCAAACGACACAACTAATCTAAACCGACCTGCTATCCGGGAAAACACCATGCCAAGATAACGCTAACGGGTCCACGGCACAAGCGACGCTTTAATTCTGGTTTATTAATTGTGTCTAAAtgtcaaataaacaaaaaaatactcaATAAGTCACGTGTCGTTTGATATTTCTCTCAGTTGTTAACCCTGCTGTAATGTGTACATCCTATGGTCATTTCACATGTAAAATAGGTGCATCACACTGCTTTTTTTGTTGAAGAACAGTTGCGTCTTTTcgtttcactttttttcactCAAGGCGTTCACGGCGCTCTGAAACTCAAAAGCAAAATGCTTCACTCTCACTGATAATCATAACAAAAAGTTGCCCCAGGCTGCTAAAACAAGCCCTGTCTGAACTTTAAACACGCCATAACTGTGTTGGTGAGTTGGTGACTGTGTGAGCGGTGTGACGATGGCTGTCTCCAGTGTCTTACAGGAAATGTTTGGATCCAAACGCAGAGGAGGACATGAGAAGACAAATGAAAAGGATGCTGATGAAGACTCTGTCGCAAGATCTTGCTGTGCAAGGAGGAAAATCTACAACATCAATACTAATGGGTCAGAGGGCCCTGACAACATCAGTGTGGTGGTAGATGGTTCTACCATTGTTAAGGTTAGACTGTTGGGGGACTTCctacactgagctcctctctctctctctctctctctctctctctctctctctctctctctctccatctgtgtgcattcatgtcccagtgatgcttgttactaacctatcTCCGGGGAGATtgttccccggagtccttatgttttatCTCCTCACAGATTTCTCTGGATTGGGGTGGCACCTTAACCGTTGTTGCcgctgccgtggtcctgctctacGCCCTGAAGTCTTatttctgtatctctctctctctctctctctctctctctctctctctcccaccaaCCGGCAGCGTCAGATGGCCGCCCCCCCCAAAGAGTCtggttctgtctgaggtttctgcctgttgaaAGGAAGTTTTTTCTCACCACtgttgctcttggggggaattgttgggtctctgtcaatcacagagtgtggtctagacctactctatctgtaaagggtCCGTCTGTGATTtgacaaataaaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82653 lncRNA downstream 19816 14993477 ~ 14993780 (-) True G61699
XR_005639490.1 lncRNA downstream 28411 14983467 ~ 14985185 (-) True LOC120560531
TU82649 lncRNA downstream 47811 14965307 ~ 14965785 (-) True G61695
TU82581 lncRNA downstream 145939 14802564 ~ 14867657 (-) True G61631
TU82599 lncRNA downstream 214447 14798920 ~ 14799149 (-) True G61647
TU82666 lncRNA upstream 8703 15026519 ~ 15027395 (-) True G61706
TU82676 lncRNA upstream 50726 15068542 ~ 15068893 (-) True G61711
TU82713 lncRNA upstream 88449 15106265 ~ 15129963 (-) True G61740
TU82716 lncRNA upstream 135178 15152994 ~ 15180419 (-) True G61742
TU82799 lncRNA upstream 234877 15252693 ~ 15253905 (-) False mfsd14bb
XM_039803153.1 mRNA downstream 22451 14989147 ~ 14991145 (-) True LOC120560533
XM_039803266.1 mRNA downstream 388399 14600261 ~ 14625197 (-) False tsc1a
XM_039803264.1 mRNA downstream 388399 14600261 ~ 14625197 (-) True tsc1a
XM_039803265.1 mRNA downstream 389060 14600261 ~ 14624536 (-) False tsc1a
XM_039804332.1 mRNA downstream 414555 14582084 ~ 14599041 (-) True ak8
XM_039804652.1 mRNA upstream 12060 15029876 ~ 15041380 (-) True tti2
XM_039802121.1 mRNA upstream 28066 15045882 ~ 15061352 (-) True LOC120560022
XM_039802120.1 mRNA upstream 28937 15046753 ~ 15064841 (-) False LOC120560022
XM_039803861.1 mRNA upstream 52451 15070267 ~ 15076395 (-) True ppiaa
XM_039803860.1 mRNA upstream 61069 15078885 ~ 15104108 (-) True LOC120560949
unassigned_transcript_258 other downstream 45019 14968496 ~ 14968577 (-) True trnas-gcu_3
unassigned_transcript_257 other downstream 45436 14968079 ~ 14968160 (-) True trnas-gcu_2
unassigned_transcript_256 other downstream 45836 14967679 ~ 14967760 (-) True trnas-gcu_1
unassigned_transcript_255 other downstream 62013 14951502 ~ 14951583 (-) True trnas-gcu
unassigned_transcript_254 other downstream 64766 14948759 ~ 14948830 (-) True trnae-cuc_15
TU82671 other upstream 19163 15036979 ~ 15041364 (-) False tti2
TU82785 other upstream 198734 15216550 ~ 15218409 (-) False sdhaf1
TU82789 other upstream 207279 15225095 ~ 15232689 (-) False LOC120560831
XR_005639521.1 other upstream 352011 15369827 ~ 15402324 (-) False LOC120560838
XR_005639520.1 other upstream 352011 15369827 ~ 15402324 (-) False LOC120560838

Expression Profile