RNA id: XM_039804652.1



Basic Information


Item Value
RNA id XM_039804652.1
length 2029
RNA type mRNA
GC content 0.54
exon number 10
gene id tti2
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15029876 ~ 15041380 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCTGTCCCTCCCAGTAAAACGTCCGGAGGTTTCAGTTTGCCTGCCGCGAATCTGAAAGAAAACTATGTCAAATTAAAGAAGAATCGGTTGTTTCTCCACATCGATGGAAGAAGAACAGTATCCGCTGCTGATCTAAGTATGGAGCTCTCATCTTTACTTCATGACCTTCATctatcatcctcatcctcctcgtcctctgagaagcccctcccctctccctcccttcctccaaTCACAGAGCTCCTGTCTCGGCTGCAGGAGAAGCTGATTGGTGTGTCCACCGACTGTGAAAAAAGCTCTCTGATTGGTCGTGTGGAAAGGCTCTTCCAAACAGCAGATCCCCATTGGCTGTTCCCAGCCAATCAGGATAATGGGTTGGCAGAGCTTCAGGATGCCTACAGCTCTCTGGTCaacgttctgattggctgtgcaGCTCTGCCGCTCTGTGAGGGCGACTGTGACTCTCTGCCGGCTGCAGCCTATCAGAGCGTCCCTAGCAGAGCTGGACCAGTATGCTCCACCCTCACAGCGCTGCTGGGAACTTTGGGAAACAGAGGCCGTCAGACCAGTGTGCTGCTTGCTGTAGCTCCAGCTGTGGCTGTGTTCGCTGTCACTCATTTCCAGGATCAGGCATGGACCAGCTGCTCCTCCAGAGCAGCGGCTCAGAGCCTGCAGGAGGCTCTGCTGAGGGCGGGGGGCTGGAGGGACTCCCCCCACCTCCTGATGGGGGACAGGAGTCagggggaggaaggggaggaaggagggaagaaCAGAGGAATTCTGGGAGGAATCCTGGACATCCTGCACCATCAACTGACCAAgGACTCGTGGCAGCGCTGCGAAGCAGTGAAGTTGGTGTTTGCGTGGACGCTCCTGCAGgtgacCCGCCCCTCTCTCACCCCTCACCTGCCccacctcctccccccctccctcctcctcaacGACCACTACAGACCAGAGAACTGCATGCTGGGAGTTCGCTGTCTGCACCACATCGTGCTCAACACGCCTGCTGCAGATCTGCGTCAGTTCAACAGAGCAGAAGTTATCTACCAGGCGTTATTCAAACACCTGTACACTGCAGAGACTGCTGTCATAcagtcGGTCCTGTCCTGTCTTTTGGAcctgttgttggttttggagaagcccccctcctctctcgcCCCCTCTTCCTCCCGCAGGAAGCCCTGTCGCCATGACGACGTGTTGCGTCTGGTCCtgagacacatggagacagagGACAAGGTGGCGCTGCGACGTGTCTACGCCTCCGCTCTGCCTCTGTACATAGACAGGATGGGCGTGGCGGTGTGCAGACACCTGCGGCAAGTGGAGCGGGTGGTGGTGGGATACCTGGAGGTCAGAGATCCCCCTGAAGAGACGAGCCGACTGAAGATCCTCGAGGTCCTGCAGAGAACAACCAGAGCAGCCTGGCCACgAATGGTGTGTCATGTTGCCGTGTTGCTGCGTTGCCTGTTGAAGTTGCTGGTTGCTGTGTCTTCAGACCGTCAGCTCAGTGACTCAGTGAGACAGAAGCTGATGAAGgaaacgtctgtctgtctcaaaCTGCTGGACGGCTGCTGTCATGGAGacctgcagCCTCTCCTCCAGCAGGTCgacagcagctgctgcagccCTGAGGTGCTCAGTTGCCTAGCGACAGTAACTGTGACGACAGAGAGGTGATGTCGAACACCTGGAACATCTCCCTACTGAAGACGTAaatctaaaaaaacacaaatattgacTTTGATCAGTAAGTTTCTCAAACGGCtggtcactgtagtttttatcAAACAGGAAATGTGaaggggactattttcagcggcAGATGAGGATCTGACACACAATACGTGTAGAAAATATAgaactgctgctgctcttgTTTCAGGCAACTATTGTATATTATGGGCTGGAATGTGTAAAAGTAACATTTCTTAATGTTGTTACCATGACAACCGTGTGTTTTCTCTTTGTGCAAATCAAAGAAAAAGAGATAAACAGTGTGTATATTCAGCCTTGTCCAATT

Function


GO: NA

KEGG:

id description
K23115 TTI2; TELO2-interacting protein 2

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82666 lncRNA downstream 2481 15026519 ~ 15027395 (-) True G61706
XR_005639397.1 lncRNA downstream 12060 15013596 ~ 15017816 (-) True LOC120559984
TU82653 lncRNA downstream 36096 14993477 ~ 14993780 (-) True G61699
XR_005639490.1 lncRNA downstream 44691 14983467 ~ 14985185 (-) True LOC120560531
TU82649 lncRNA downstream 64091 14965307 ~ 14965785 (-) True G61695
TU82676 lncRNA upstream 27162 15068542 ~ 15068893 (-) True G61711
TU82713 lncRNA upstream 64885 15106265 ~ 15129963 (-) True G61740
TU82716 lncRNA upstream 111614 15152994 ~ 15180419 (-) True G61742
TU82799 lncRNA upstream 211313 15252693 ~ 15253905 (-) False mfsd14bb
TU82801 lncRNA upstream 262349 15303729 ~ 15306067 (-) True G61813
XM_039803153.1 mRNA downstream 38731 14989147 ~ 14991145 (-) True LOC120560533
XM_039803266.1 mRNA downstream 404679 14600261 ~ 14625197 (-) False tsc1a
XM_039803264.1 mRNA downstream 404679 14600261 ~ 14625197 (-) True tsc1a
XM_039803265.1 mRNA downstream 405340 14600261 ~ 14624536 (-) False tsc1a
XM_039804333.1 mRNA downstream 430734 14582084 ~ 14599142 (-) False ak8
XM_039802121.1 mRNA upstream 4502 15045882 ~ 15061352 (-) True LOC120560022
XM_039802120.1 mRNA upstream 5373 15046753 ~ 15064841 (-) False LOC120560022
XM_039803861.1 mRNA upstream 28887 15070267 ~ 15076395 (-) True ppiaa
XM_039803860.1 mRNA upstream 37505 15078885 ~ 15104108 (-) True LOC120560949
XM_039803864.1 mRNA upstream 67636 15109016 ~ 15152609 (-) False ogdha
TU82656 other downstream 12163 15013533 ~ 15017713 (-) False LOC120559984
unassigned_transcript_258 other downstream 61299 14968496 ~ 14968577 (-) True trnas-gcu_3
unassigned_transcript_257 other downstream 61716 14968079 ~ 14968160 (-) True trnas-gcu_2
unassigned_transcript_256 other downstream 62116 14967679 ~ 14967760 (-) True trnas-gcu_1
unassigned_transcript_255 other downstream 78293 14951502 ~ 14951583 (-) True trnas-gcu
TU82785 other upstream 175170 15216550 ~ 15218409 (-) False sdhaf1
TU82789 other upstream 183715 15225095 ~ 15232689 (-) False LOC120560831
XR_005639521.1 other upstream 328447 15369827 ~ 15402324 (-) False LOC120560838
XR_005639520.1 other upstream 328447 15369827 ~ 15402324 (-) False LOC120560838
TU83104 other upstream 1463246 16504626 ~ 16505067 (-) True G62064

Expression Profile