RNA id: TU82716


Basic Information

Item Value
RNA id TU82716
length 1823
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G61742
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15152994 ~ 15180419 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgggtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgagtgagataACACCAGACTGGTCCTTTAAATGGTAGATTCTTATTCGTATCCAGACAGTAGTTTAGATGTGGATGACGTGATGGATGATGTGTAATAACAGAATCAAGAAAAATGTTGGGGAGATATACCCTGAGTTTGGTCCTCGAGGCAGAGATTCCTTCCAAACTACAGTACACTTACAGTAACACTTAAATCCTACTTGTTACTAACTTAAGACTCTTCTTAAAAAGTAGGGGGGTAGGCAGCCTGAGAGGTAAAACTCAGGACAAGAGTCTCATGGTGCAGTTACAGTATATTTATGCTAAAcctgtgtatactgtatgtgtgcgttGTACCACAGCAGGTAAATAGTACAGGCATTATGCAACATGACCCCACACACATTGCAATAGAAACTCTTTCAACTGATCTAGTCTCATAAAAGTCTCCTCTACAACATAAACAAAGTCCTAAGAGATCCAAGTGGTGGAATGTATTGAAACATACAGAATTTGGTGATGCCACAATCTCCCATTGCAGCGCATGGGAATATggaaaatatataaaactaacaaatatcaccatgaaacttccccagttgattaaGACAATCAATTTTTATTACAAGTTTCCTGAACTTTTATATCTAATTATGCAAATAATGCATTATCTTattaaatatgtgctaatttgcataaataaagCTGTTTTGGTATTTTTAACTTGGAACCTATTTTccattggtgtctaagtgactaatgtgaacaaaaatctttgaaatcttTAGACCAGTATTGAGTGAGAACGCTCCAACCGGCAGCCACAAACCGGGCTGTAATGGAAAATGCACACggtcagaaaaataaaaaaatagggtccaggttgaaaaaaaacccgtacccttttaaatattattttaggAAGCAAAAAAGTGGAGCAAGGGTATGGTTAAGAAACACAtatatttatgcaaattagcacatatttaatGAGACaatgcctaatttgcataattaaatataaaagttcagaaaactaatataaaacttctaactaaaacaaaaaagtatCGTCctaatgtaaataatcaactggggaagtttcatggtgatatatCTGTTAGTTAAGAATGCCCATGCACCTTTAGTCTCCCCCCTTAACATGGGCTGCAATGGGAAATTGTGGCATCGctgatttcagtatttttccaTACTTTCCACCATTTGCTCTCTTAGgactttttatatattatagagCAGACTTTTATGAGTAATAAATATTTGTCTGattttctgttgcaatttgtggAAGACtcatccattttttttctcacaaaaggCTTGTACTAAAAGGGACACCATATGATTGATTGGCAGGTGTCATCTCTTAGTAAACACTGATATCACCATGGCAGAGAATCTCGTCACGTTTTTCTATTATAATAAATGATTTTATATAggattttgtttgtctttttctctttgcAAATGTCAACATGTTATCTGTGGTAATACGTttcatttcattattaaatATTGCTGTGTCACAAGGAAACCTGTGATTGATTTTTATGTTCAAAACCGTCAATTATGTTAAACTTTTATCTCTAACCCGTTGGAGCTGAAAACAACGACGCTCCACTCTGGACCTTTTGTTTCTGTCATGGTTTATTGAAGTTTACAGTTTGACAAGTTTCAGGTTACTATAGCAACGGCCATGGAGCAGAACCATAGAG

Function

GO:      GO:0035068

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82713 lncRNA downstream 23031 15106265 ~ 15129963 (-) True G61740
TU82676 lncRNA downstream 84101 15068542 ~ 15068893 (-) True G61711
TU82666 lncRNA downstream 125599 15026519 ~ 15027395 (-) True G61706
XR_005639397.1 lncRNA downstream 135178 15013596 ~ 15017816 (-) True LOC120559984
TU82653 lncRNA downstream 159214 14993477 ~ 14993780 (-) True G61699
TU82799 lncRNA upstream 72274 15252693 ~ 15253905 (-) False mfsd14bb
TU82801 lncRNA upstream 123310 15303729 ~ 15306067 (-) True G61813
TU82830 lncRNA upstream 245132 15425551 ~ 15427495 (-) True G61837
TU82900 lncRNA upstream 278414 15458833 ~ 15462921 (-) True G61894
XR_005639525.1 lncRNA upstream 361413 15541832 ~ 15544351 (-) True LOC120560849
XM_039803864.1 mRNA downstream 385 15109016 ~ 15152609 (-) False ogdha
XM_039803862.1 mRNA downstream 385 15109016 ~ 15152609 (-) True ogdha
XM_039803865.1 mRNA downstream 385 15109016 ~ 15152609 (-) False ogdha
XM_039803863.1 mRNA downstream 412 15109016 ~ 15152582 (-) False ogdha
XM_039803860.1 mRNA downstream 48886 15078885 ~ 15104108 (-) True LOC120560949
XM_039803698.1 mRNA upstream 21720 15202139 ~ 15211704 (-) True ercc6l
XM_039803700.1 mRNA upstream 36133 15216552 ~ 15218422 (-) True sdhaf1
XM_039803701.1 mRNA upstream 44551 15224970 ~ 15232693 (-) True LOC120560831
XM_039803704.1 mRNA upstream 72196 15252615 ~ 15278184 (-) True mfsd14bb
XM_039803709.1 mRNA upstream 128639 15309058 ~ 15317062 (-) True LOC120560836
TU82671 other downstream 111630 15036979 ~ 15041364 (-) False tti2
TU82656 other downstream 135281 15013533 ~ 15017713 (-) False LOC120559984
unassigned_transcript_258 other downstream 184417 14968496 ~ 14968577 (-) True trnas-gcu_3
unassigned_transcript_257 other downstream 184834 14968079 ~ 14968160 (-) True trnas-gcu_2
unassigned_transcript_256 other downstream 185234 14967679 ~ 14967760 (-) True trnas-gcu_1
TU82785 other upstream 36131 15216550 ~ 15218409 (-) False sdhaf1
TU82789 other upstream 44676 15225095 ~ 15232689 (-) False LOC120560831
XR_005639521.1 other upstream 189408 15369827 ~ 15402324 (-) False LOC120560838
XR_005639520.1 other upstream 189408 15369827 ~ 15402324 (-) False LOC120560838
TU83104 other upstream 1324207 16504626 ~ 16505067 (-) True G62064

Expression Profile