RNA id: TU82980


Basic Information

Item Value
RNA id TU82980
length 3430
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G61956
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15773679 ~ 15777138 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCATGTCTCGGCTCCTTATTCCTGTCCTGAAATGTCATTGGTCCGATCTGGGCACATGAAAATGATGTCACAGGCAGGCAACGTAGCAGGCGGAAAAAGACAGATCTTAGAAAATGAGGCAGGCATACACCTACTTTACAACATCAACAGGCATACTGTagaaaatacaaacataaatTAAGTAGCtatgtacagtatttaaaaaataaatagtctCATTTCAACTTGGTGCAAataaaagtgcttttttttttccttttacatCTGTCAGTCTGATACATTCCTTTTCTATAATTTATTTtctctaaataaaaaatactttgcTTGCAAACAGCTGAAATCCAATAATAAAAGACAGAACAAGAAACGGTATTTGGATGCAATACCACACAATAGTCACCACattttttgtaaagtaactacatACAGTAGTAGACCCATACGTATCGGGTATTCAAACAGTCCCTTCAGGCATTATAAAAAGCCATCCTTCACGAGCCACAGAGTGGGTTTGTTGAGGGAGGCTATAATCAGTCTGCGACGCTACTCTTAGGGGACAGTCTGTTATTGTCTTTCAAGTGGATTcctcaaaacaacaaaacaaaatcaatgGCCCTCTGGAGTGACAAATCCAAGCCTGTTGATATTTAAGCATGGATATGGATGGGTAAAGAGGGATGGGAAAGGGTACAGGCAATGGCAAGAAGACAGGCAGGGCTAGAAGATGACACAATGGCAGAAGAGCGCTTTAGTTGTAGTAGAGAGGGGGTGTAGAGTgataaagacagagagacagacaaagggAGGGGGGAAATGGAGGCAGGGATCAGTAGGATGAGGGGAGACCTCTTCAAATGTAGCCTGAGCTGTGATCTTTCAACAGATGCTCAGCAAGAAGCCCAGGAGGCCGTCCCTTCAGACAGGGTCGCAACCCCGTTCACTGACGAATGAGGGAACCGCAGAGAGAGCAAACGGAGAGAAGCATGATGGGAAAAGAGATCTGAAATAGCATAAAACCCACACACGCATACATTCCTCCATCCCTGACATCTGAGGCCTAAGTCCCCTCAGAGGCTTGCCTTGTCACACAGCGACTTGCTGCTCATCTAGCTGACGGCCTTCTACACCAGTAAACTCCACACCAAATAACAGCTGGCACTTCTgctgcaccacacacacacacttcaacatGCTGACACACACATTGACTGAATCTACGCATCAGTGTACAGCTGGAGGGGTGATACAATTGTAACACACACCGACGGCGAGAAAAGCAACGTGTCTTTGATTGCATAAACATGTGTACGCAAACACTCTCATACACAGTTCACATACACAAGCCTCTGTCTCTGGAAAGGCAGATCAAAGTTGAGCTGTGGGCACAGGAGGTGGGGCAGATGGAGAGGGTGGCCAGCCTGGGGCACAGCATCACAGAGAgcatgtttgtgtgagtgtgtgtgtgtgtgtgtctgagagagaaTGTGTCTGCTCAAATGGGATGTTATGCTTTCATCTGTGAGCAAGTAGGTGCAGTATGTGTACGCGAGATCTCTTAAAGAAGCGGTGTATTCACATTAGAggatgtgttcttttttttttcttttcttttgtgtctgcatgcatgcttgtgtgtgcgtgcgtgtgtgaatGCTGTCTTGTGTGGCCGCCAAGGCAAACGGAGAGATGAGAGGAAAGGAGACCAGCCTTTCAAACAAGATTAGGGCTGTGGCTGCCTAAAGGCCTGCCTGGCGACACTCTGCATAGACTGGGTGACATCTATATTAACGACAGCAGAAGGCCCAGTCTGCTGCGCCtcctgacagacagagaaggtGTCTCGATGATTGGCTGACAGGGGACTTTGACACGTTTTTAAGGGGTTAAAcgaggctacagctaaattatcTGGATATTTAGTAGTGATAAAGGTTTGGGGCAAAATACAAACTGTTTAATCCTCTACAGTGATGTTCCTTTATCCTCTGGGTATTATTTAATTATGATTATGTAATCACAATCTATTTTAAGAAGAACAGACTCACTGTACTTTAAACTAATACCACTGTCCACTgtggtttgatttttttttttttttttggattaatatctttaaaaaaaaagaagaagcaaatTTGGCCCTTGTATTAAAAGCACAGACAGATACCAGCACAAGCTTTCAGCCTGTTGGTCcagctttgtgtttgtgtagatGGACATATCTGGAGGCTACGACCATAATTGCTAATCAACTTGGCTGGCTGAGTTAAGTGGAAACAATCCAAATTACTGCCAGTGAACATAACATCATTACGATCCAAGAGAGGAAGTAAACAAAAGGTTCTTCAGTACAAAAACAATtagaaaatatgaacaatattaccaaaaacatttaataataagaacaatatgagctaaaaaaaacttaaaagtcTATTGCAGAGTTATAATGCAGGCTTGTATTTTGATAAGCACGGATACACTACAAATGTATTTTGGGGACGGTGAGTTTAAATGTTAAAGCTCGTTTTACTCATTGTGTGACACTTGTCACTCGTGGCGAGTAGATGGACAGAGTGCTCGGAGCTGTCAGAGTgatggagagaggaaaagagaagagtgGCTCACACGGCTGAGAAAAAGGTCATTCCAAACATCCTTTCATCGCCTTTTAAACTTAATCAAAAACATAAATGGGAATATTTCTTGTACTCGTCTTTTTTATACAAAAATTACACTTCAGgaaactgtactgtactgtacttcaTGAGCAATTAAcgacagaaaaaaaatgaggttttagagaagaaaagaggaaagaaaaaaaggaaggatAGCTGAGCCGAGCTGATACGGAGCTGTCTTCCTCTGCTCCTTAGCGTCCAGTAATAAGACCACGAGAAGAAAAGTGGAGAAGAGAAGAGTTGGTGGGCGGACACAGTCATCTACCCGGGgttgtttttcttccttttatttGGACTGGGATTGGGATCCAGTTTCAGCTCTCGGTACTGCACCtgttaaaacacacagaaacacacacgcaggcatgcacgcacgcacgcacgcacacgcacacacacacacacacacacacacacaccacccggTCAGGTGGAAAGAGCAAAGGATGCTTGAATAGCACAGAAACCCTCCAGAGGCTCTCTGAGTCCAGCTGTGTGGAACAGTGGCCTCAGGGAAGGGATTACACActgattacaacacacacacacacaatctacacacacacacacaatctacacacacacacacacacacacacacacacacacacacacaatctatgTACACTGTTCAAAGCTCCAAATACAGTCGTGCTtatacacagacgcacacaaatAATACGCGTACACACAGACTTCTGCAGATGTGGGACAGTGGCCTAAGGGAAGGgatcacacaaacaaac

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function
GO:0005515 protein binding molecular_function
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639525.1 lncRNA downstream 229328 15541832 ~ 15544351 (-) True LOC120560849
TU82900 lncRNA downstream 310758 15458833 ~ 15462921 (-) True G61894
TU82830 lncRNA downstream 346184 15425551 ~ 15427495 (-) True G61837
TU82801 lncRNA downstream 467612 15303729 ~ 15306067 (-) True G61813
TU82799 lncRNA downstream 519774 15252693 ~ 15253905 (-) False mfsd14bb
TU83024 lncRNA upstream 160838 15937976 ~ 15939248 (-) True G61993
TU83027 lncRNA upstream 205738 15982876 ~ 15983411 (-) True G61996
TU83032 lncRNA upstream 319283 16096421 ~ 16100383 (-) True G61998
TU83037 lncRNA upstream 340089 16117227 ~ 16141681 (-) True G62001
TU83054 lncRNA upstream 375911 16153049 ~ 16155689 (-) False LOC120560105
XM_039803979.1 mRNA downstream 139173 15622929 ~ 15634506 (-) True fam81b
XM_039803978.1 mRNA downstream 139501 15622929 ~ 15634178 (-) False fam81b
XM_039803839.1 mRNA downstream 151451 15615792 ~ 15622228 (-) False LOC120560939
XM_039803838.1 mRNA downstream 151451 15615792 ~ 15622228 (-) True LOC120560939
XM_039803733.1 mRNA downstream 171408 15591345 ~ 15602271 (-) False LOC120560853
XM_039802841.1 mRNA upstream 105 15777243 ~ 15811159 (-) False slf1
XM_039802839.1 mRNA upstream 106 15777244 ~ 15811158 (-) False slf1
XM_039802840.1 mRNA upstream 107 15777245 ~ 15811420 (-) True slf1
XM_039802843.1 mRNA upstream 1275 15778413 ~ 15811161 (-) False slf1
XM_039802842.1 mRNA upstream 4882 15782020 ~ 15811161 (-) False slf1
XR_005639521.1 other downstream 371355 15369827 ~ 15402324 (-) False LOC120560838
XR_005639520.1 other downstream 371355 15369827 ~ 15402324 (-) False LOC120560838
TU82789 other downstream 540990 15225095 ~ 15232689 (-) False LOC120560831
TU82785 other downstream 555270 15216550 ~ 15218409 (-) False sdhaf1
TU82671 other downstream 732315 15036979 ~ 15041364 (-) False tti2
TU83104 other upstream 727488 16504626 ~ 16505067 (-) True G62064
TU83119 other upstream 771484 16548622 ~ 16550256 (-) False LOC120561322
TU83120 other upstream 771484 16548622 ~ 16551175 (-) False LOC120561322
TU83121 other upstream 771484 16548622 ~ 16550256 (-) False LOC120561322
TU83278 other upstream 1346858 17123996 ~ 17124477 (-) True G62194

Expression Profile