RNA id: TU82990


Basic Information

Item Value
RNA id TU82990
length 332
lncRNA type sense_over
GC content 0.42
exon number 4
gene id fam172a
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15943698 ~ 16099484 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTGTTTAAGAAATTTCGAGGAAGCAGAAGCAACTGGACAGTCGCGTATAGCTACTGATGATTTGCTGTCAAGAATAGACTTAGATGAACTGATGAAGAAAGATGAACCTCCTTTCACTTTCCCCAAAACACTGGAGGAGTTTGAATATGCCTTTAATGAATATGGCCAGCTCAGACATATAAAAACAGGAGAGCTCTTTGTATTTAATGCCAGGGAGGATCTCCACCGCTGGAACCAGAAACGCTATGAAGCTCTTGGAGAGatCATCACTCAGTATGTTTATGAGCTGTTGGAGAAAAAGTGCAACATGACTAAAGCAATCCTGCCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82947 lncRNA upstream 166599 15757590 ~ 15777141 (+) False mctp1a
TU82871 lncRNA upstream 370767 15532867 ~ 15572973 (+) True G61867
XR_005639524.1 lncRNA upstream 398263 15540869 ~ 15545477 (+) True LOC120560848
XR_005639523.1 lncRNA upstream 403896 15539355 ~ 15539844 (+) True LOC120560847
TU82867 lncRNA upstream 410944 15532108 ~ 15532796 (+) False LOC120560526
TU82991 lncRNA downstream 487 15961601 ~ 16045838 (+) True G61966
TU82993 lncRNA downstream 74337 16035451 ~ 16056705 (+) True G61968
TU82995 lncRNA downstream 87269 16048383 ~ 16049879 (+) False G61970
TU82996 lncRNA downstream 87269 16048383 ~ 16050693 (+) True G61970
TU83002 lncRNA downstream 162086 16123200 ~ 16198871 (+) True G61975
XM_039802830.1 mRNA upstream 4887 15811685 ~ 15938853 (+) True kiaa0825
XM_039802831.1 mRNA upstream 168224 15636798 ~ 15775516 (+) False mctp1a
XM_039802834.1 mRNA upstream 168224 15636798 ~ 15775516 (+) False mctp1a
XM_039802832.1 mRNA upstream 168224 15636798 ~ 15775516 (+) False mctp1a
XM_039802833.1 mRNA upstream 168224 15636799 ~ 15775516 (+) False mctp1a
XM_039804474.1 mRNA downstream 500124 16461238 ~ 16467976 (+) True LOC120561380
XM_039804475.1 mRNA downstream 500124 16461238 ~ 16467976 (+) False LOC120561380
XM_039803780.1 mRNA downstream 507196 16468310 ~ 16475897 (+) True LOC120560890
XM_039804482.1 mRNA downstream 516384 16477498 ~ 16484029 (+) True LOC120561386
XM_039804483.1 mRNA downstream 526280 16487394 ~ 16492635 (+) True LOC120561387
TU82943 other upstream 166599 15763114 ~ 15777141 (+) True mctp1a
unassigned_transcript_261 other upstream 324596 15619073 ~ 15619144 (+) True trnac-gca_21
unassigned_transcript_260 other upstream 324925 15618744 ~ 15618815 (+) True trnac-gca_20
unassigned_transcript_259 other upstream 325784 15617885 ~ 15617956 (+) True trnac-gca_19
XR_005639522.1 other upstream 509297 15431708 ~ 15434443 (+) False zgc:101664
XR_005639530.1 other downstream 507209 16468323 ~ 16475897 (+) False LOC120560890
TU83070 other downstream 507253 16468367 ~ 16475905 (+) False LOC120560890
TU83072 other downstream 572215 16533329 ~ 16534149 (+) False LOC120560897
XR_005639579.1 other downstream 2037572 17998686 ~ 18009318 (+) False cmya5
TU83701 other downstream 2369591 18330705 ~ 18331230 (+) True G62513