RNA id: XM_039802847.1


Basic Information

Item Value
RNA id XM_039802847.1
length 1449
RNA type mRNA
GC content 0.51
exon number 11
gene id fam172a
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15943698 ~ 16099484 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAAGCTATAAGCTTGTAGCCTGTACAGGAGTGTACTATTCGACAGTGTTATATTGTGTTGGCTCACTGCCACCTTTCAGGTGCAGCAAGCTTTGAGGCAATTACCTTCATAGTCTGGATGCATCTGATTGACCTTTGGGAGGGGAGGACCCATGCTCTCTCATCTTTGCGCTGCCACACCAGCCCTGTACATATTGTGGATCACTATGGCCCAGATAGCTGGccaggaggacagagagaaaaccACTGCACTCAAAGATTTGCTGTCAAGAATAGACTTAGATGAACTGATGAAGAAAGATGAACCTCCTTTCACTTTCCCCAAAACACTGGAGGAGTTTGAATATGCCTTTAATGAATATGGCCAGCTCAGACATATAAAAACAGGAGAGCTCTTTGTATTTAATGCCAGGGAGGATCTCCACCGCTGGAACCAGAAACGCTATGAAGCTCTTGGAGAGatCATCACTCAGTATGTTTATGAGCTGTTGGAGAAAAAGTGCAACATGACTAAAGCAATCCTGCCAGTGGATGCTACAGAAGATGAACCCACCAGTTTCATCTACCTGAGCCCAGATGCCTTGACCAACCCTTCTAAACTGCTGGTGCTGATCCAGGGCAGTGGCGTGGTGCGGGCCGGGCAGTGGGCCCGTAGACTCATCATCAACCAGGACCTGGACTCAGGGACACAAATCCCCTTCATCACCAGAGCCATGGAGGAGGGCTACGGTGTGATGGTGCTCAACCCCAATGAGAACTACCTGGAGGTGGAGAAGCCAGCCATGTCCTCTCCCCTGCCCTCTGCTACTGAAACCTCGGACGAACCTGCTGAAAAGAGGGAACGCAAAGATGATAAAGAGggcaaaaagaagagagaatttTATGAGAAGTACCGTAACCCACAGAAGGAGACGGAGACCGAACAGATCCCTATACGGGAAAATGGTTCCTCCGAGGAACACGTGCTGTATGTGTGGGACCACTTTGTGTCCAAAGCTGCAGCCAAGAATATCTTCATCATGGCCCACAGCTACGGAGGGCTGTCTTTCGTTGAGCTGATGAATCAGAGGGAAatgcaggtgaagaacagagTGTGTGCCGTGGCTCTGACTGACTCGGCTCACAACATCTGGCTGCAGGAGACCAGCAAAGGCACACAGGACTGGATGCAGCAGCACTGTTGTAACTGGGTATCAAGTCCAGAGCCCCTGGACACACCACTGGATCCCATGCTGCCAGACTGCCCCCAAGTCTCTGCAGGCACAGAGCGGCATGAGCTGACCTCCTGGGTGAGTTTCAACACCATCTTCAGGTTCTTCAGTGAGGTCCTGGAGGCGAAAGAGGATGAGGAGGCGGAGGAGACCTCCAACGCTGTCACCACACGCAGCAGCTCCCTCAAAAACAAACACCAAGATTTGTAGAGGACTGACAAAAATGACTTGGAACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82947 lncRNA upstream 167134 15757590 ~ 15777141 (+) False mctp1a
TU82871 lncRNA upstream 371302 15532867 ~ 15572973 (+) True G61867
XR_005639524.1 lncRNA upstream 398798 15540869 ~ 15545477 (+) True LOC120560848
XR_005639523.1 lncRNA upstream 404431 15539355 ~ 15539844 (+) True LOC120560847
TU82867 lncRNA upstream 411479 15532108 ~ 15532796 (+) False LOC120560526
TU83002 lncRNA downstream 23716 16123200 ~ 16198871 (+) True G61975
TU83008 lncRNA downstream 35110 16134594 ~ 16142799 (+) True LOC120560394
XR_005639478.1 lncRNA downstream 40655 16140139 ~ 16142799 (+) False LOC120560394
TU83073 lncRNA downstream 412687 16512171 ~ 16514043 (+) True G62033
TU83128 lncRNA downstream 467998 16567482 ~ 16567714 (+) True G62082
XM_039802830.1 mRNA upstream 5422 15811685 ~ 15938853 (+) True kiaa0825
XM_039802833.1 mRNA upstream 168759 15636799 ~ 15775516 (+) False mctp1a
XM_039804474.1 mRNA downstream 361754 16461238 ~ 16467976 (+) True LOC120561380
XM_039804475.1 mRNA downstream 361754 16461238 ~ 16467976 (+) False LOC120561380
XM_039803780.1 mRNA downstream 368826 16468310 ~ 16475897 (+) True LOC120560890
XM_039804482.1 mRNA downstream 378014 16477498 ~ 16484029 (+) True LOC120561386
XM_039804483.1 mRNA downstream 387910 16487394 ~ 16492635 (+) True LOC120561387
TU82943 other upstream 167134 15763114 ~ 15777141 (+) True mctp1a
unassigned_transcript_261 other upstream 325131 15619073 ~ 15619144 (+) True trnac-gca_21
unassigned_transcript_260 other upstream 325460 15618744 ~ 15618815 (+) True trnac-gca_20
unassigned_transcript_259 other upstream 326319 15617885 ~ 15617956 (+) True trnac-gca_19
XR_005639522.1 other upstream 509832 15431708 ~ 15434443 (+) False zgc:101664
XR_005639530.1 other downstream 368839 16468323 ~ 16475897 (+) False LOC120560890
TU83070 other downstream 368883 16468367 ~ 16475905 (+) False LOC120560890
TU83072 other downstream 433845 16533329 ~ 16534149 (+) False LOC120560897
XR_005639579.1 other downstream 1899202 17998686 ~ 18009318 (+) False cmya5
TU83701 other downstream 2231221 18330705 ~ 18331230 (+) True G62513

Expression Profile