RNA id: TU83037


Basic Information

Item Value
RNA id TU83037
length 2290
lncRNA type sense_over
GC content 0.42
exon number 3
gene id G62001
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 16117227 ~ 16141681 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctcttAGTCGTGGGGGAGACATACTGAGAGGAGTTAAGGGGTGAGGAATGACGGAtatgaggagaggggaggaggaggacagaagATTGTTGTGGAATGTTTGCCGTTCTGGCCAGAACTCGACCATCTCATTTGTCAGGGCTTGACCCCAACTgtggggtcaaaggtcaaagggAACATCTGAGGGAAACTGACTggctatcacacacacacacacacacacacacacacacacagtcaagtaaacacacaaacatctgtgtgtctctccttTAGCACTCTCACACATAATTCAAGCTCATGCACAGTACATCTGTATATATCATCATTAATATCCATCCTAgtcttatttgttttattaatactGAGTGTTATGGTGACCTCTAGCTATTAAAAGAGCAGCTGCCAGTTTCACAAAAAGCATACTATGGTCTTTTTCCAAAACAAATCATTGAGAAGGAATTTGAGTTCCAGGATGCTTGGATTCATTTCTGAGTAGAAAAGCTTTGGATAGTACTTGATAAACACACACTAGTAAGTAATGTACAAGAGCAGCCTCTTAAAATCTATTCCGAGAGTGGCTATTTATTTACAGTTAATGTAATATTTACCACATGTATGAATCAGTACAATGAGCCAGTCAGTGCAGGGCTGTCATGTCAAGTGAGCCCAACGCTCATACTAAGCAGTGGTATCACCGTCACCATTCTGTAATCAAACAGCACTCGCCCTAAATTACATCTCAACCCAGTGTCTGTCGCTTGCAGCACACCGACCATCCCGCTGTGTTTCCGAACGCCTGGCCGCCGTGTCGCTCTCTGCCTGCGAGGAGACACAACAGAAACTCAGTTACAAAAGGGCAAGGTTAGCTCCACCGAATCACTCAGACTCTGCTTCACGTTTCACATTGAAGTGAGGAGAAAGCTGGCAGCGACAGTGTGTGTGGCCCGCTTCAATGATCACTGGACACCTGTGAGTCACATACAGTAACAGTAAGACAGAAGCCACACCTTGCACACTGTAAATGGTAGCTTGAGTTCCTGTTGAGTTTTATTAATGTGCAAATGATGATTGGCATACTAAACAGTACTGTATGGCTCGTCTGTGGTCGCTCTCTTCTACACCCCCTGTTAGGAAACAAATTGTTCATTTTTGCGCTTTAAAATGCAGCTCTCTATCTCCCTCTTTTTCTACTCTAAGGGGAGACAGGTAGCACAGCAGCTGATATTCATGGCTTTTAAGAAGGATCTTAAATCTTACACCTTTGTCATTCTTTGGCCGGAGACATCAAACAGGTGCTATGAATAATTTATCTTAAGAGTTTCACATTGATAAGGTCACAATCTGCCAGGTCTGGACACTAAACACAGGCCACCTTCACTTCACTGTCTTTTTACACACATGTGccaacaccagacacacactctcaaacaaaataaaaaaagttaagaGCATTTTGtccatgtgtgtgggtgtgtaagaGAAAGGGCTATATTCTTTGTTTAaaatattattgtgtgtgtgtgtgtgtgtgtgtgtgtgCTAGTCAGTGTTTTCAATTAGAAATGTGTGATTAAAACACAATTGCTGTGTTATATTTTagcataataaataatatgtcACAGATGTTTAGGAGGGTTGGAATTAAAGTACAACTTTGATTGCAGCTTCGTATCCctatatatattcatttatgGCAAATAATATTttccaaatgtaaataaataaagatgtgTTTCACTCAAACTGCCTCTGGGAATTTGTGAGGAaatcattttgttgttgttttctgtgaTGTAAAGGAGACTGCACCAGTGTGCTCAGTCATTCTCAGCTCCAGCATGCTGATGGTTCAGCTACACTACATTTCTAATTAAGCCCCTGCTGTGTGTTGGTTTTGAGGGGGGGACATTCGAGAAAAAATAATGCACTCATTTAGTTACAAACCAAAAGTTAAATAACCAAACAAGTTCAACCAAATGGGGCAAACTGACCCAGTGTTAGTAATCCTTGCAAGGTATCATAACCAAGAGTGTATCCTTGCTCATCTTCGCTCACTTTTATATTGATGTTAATTTACTCAGCATAAATATTAATGGGTAAACTCTTTTTAGATGGCTCCAGCAGCCACTACCTACACCACTACGACAGTGACGGGACACTTATGAACggcaagcttttttttttgtctcccccTTCGAAAGCACACAGGGAATAGCTCCTCTAATGTGTTGaccccccctcctcttcctcttccctcctctgtctctctctctctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83032 lncRNA downstream 16844 16096421 ~ 16100383 (-) True G61998
TU83027 lncRNA downstream 133816 15982876 ~ 15983411 (-) True G61996
TU83024 lncRNA downstream 177979 15937976 ~ 15939248 (-) True G61993
TU82980 lncRNA downstream 340089 15773679 ~ 15777138 (-) True G61956
XR_005639525.1 lncRNA downstream 572876 15541832 ~ 15544351 (-) True LOC120560849
TU83054 lncRNA upstream 11368 16153049 ~ 16155689 (-) False LOC120560105
TU83105 lncRNA upstream 363589 16505270 ~ 16506122 (-) True G62065
XR_005639591.1 lncRNA upstream 365365 16507046 ~ 16508251 (-) True LOC120561369
XR_005639585.1 lncRNA upstream 406936 16548617 ~ 16550673 (-) True LOC120561322
XR_005639577.1 lncRNA upstream 421789 16563470 ~ 16564460 (-) True LOC120561239
XM_039802840.1 mRNA downstream 305807 15777245 ~ 15811420 (-) True slf1
XM_039802843.1 mRNA downstream 306066 15778413 ~ 15811161 (-) False slf1
XM_039802842.1 mRNA downstream 306066 15782020 ~ 15811161 (-) False slf1
XM_039802844.1 mRNA downstream 306066 15782081 ~ 15811161 (-) False slf1
XM_039802841.1 mRNA downstream 306068 15777243 ~ 15811159 (-) False slf1
XM_039802276.1 mRNA upstream 10739 16152420 ~ 16452488 (-) True LOC120560105
XM_039804539.1 mRNA upstream 370696 16512377 ~ 16519316 (-) True aqp3a
XM_039803786.1 mRNA upstream 389971 16531652 ~ 16546472 (-) True nol6
XM_039804382.1 mRNA upstream 405600 16547281 ~ 16548567 (-) True LOC120561320
XM_039802920.1 mRNA upstream 880857 17022538 ~ 17055682 (-) True LOC120560423
XR_005639521.1 other downstream 714903 15369827 ~ 15402324 (-) False LOC120560838
XR_005639520.1 other downstream 714903 15369827 ~ 15402324 (-) False LOC120560838
TU82789 other downstream 884538 15225095 ~ 15232689 (-) False LOC120560831
TU82785 other downstream 898818 15216550 ~ 15218409 (-) False sdhaf1
TU82671 other downstream 1075863 15036979 ~ 15041364 (-) False tti2
TU83104 other upstream 362945 16504626 ~ 16505067 (-) True G62064
TU83119 other upstream 406941 16548622 ~ 16550256 (-) False LOC120561322
TU83120 other upstream 406941 16548622 ~ 16551175 (-) False LOC120561322
TU83121 other upstream 406941 16548622 ~ 16550256 (-) False LOC120561322
TU83278 other upstream 982315 17123996 ~ 17124477 (-) True G62194

Expression Profile