RNA id: XM_039802276.1


Basic Information

Item Value
RNA id XM_039802276.1
length 2271
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC120560105
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 16152420 ~ 16452488 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGGTGAATGCAATGAGGGGAGGTTGGGCGGAAATGAAGTCAGGGCCACAAGACAACCAAATGCAAACAATGTGCGAAAACAAATGGACCAACGACAGAAGTTATAAACGGAGAAAAGGAAGCGTGATATAAGAAGACAGTGAAATGAAAAGTTCTAGTCCTAGCATCGGCACAGGACATACAGTGTGACTTGGATATGAATCTGCTTTGCTGGGGTAGTGGGGACCTTGGCCAGACTGGCCATGGCAGACCAGGGGACATCGGTCCAGAGGAGGCCCATCTGAGAGACTTCACAATGGCAAGGCTGGGCAGAGCGAAGCTCCTGGCATGTGGATCCAGTCACTCCATTGTGGTTACAGTGGACAACAAGATCTTTGCATGGGGGAATGGCACCAGTGGACAGCTGGGTAACGGAGAGAAGGCAGTAAAGGACCAGCCAGTCAAGGTTAAGTTGCCACAGGAACTGAACGTTGAAGGAAGCAACGCAGATGTGGATGTCGTCGACATTGTTGGTGTGGCCTGTGGAAGCAGACACTCCTTCATATGGACTGAAACTGGGCGGGCCTACAGTTTTGGGAACAACTTCTACGCCCAGCTAGGCTATGACGTCCAGAGGCTTGACTTCAAAGACCACCAGctggcACCACGTTTGTTCCAGAATCTCCCATCCTCTCTGAAAATATCTCAAGTGGCCTGCGGAGAGCGACACACTCTGTTTGCGCTGGAGGACGGCAGTGTGGCGGCATGTGGGCAGAATGATTATGGACAAATTGGCAGTGGTTCTGAGGAAAATGTGGTCATCCCTCGGTTTGTGGAGGGTGTGGACCATGTGTCGAAAGTCACCTGTGGGGCAAACCACAATCTTGCACTGACAGGTGACGGCAGGTTGTTTCAGTGGGGATGTGGACGGGCATGTGGGAACAGAAAAAGGAACATCCTTACCCCAGAGGAAGTGACGCCACCAAGCTCGCCAGTGAGAGACATTGCTGGCGGATGTTGGCATAGCCTGCTTCTAACAGatggTGGGAATGTCTTCTCCTGGGGGATGGGGCAAGAGGGACAGCTTGGACTTGGAGAGGAAGGGATTCATATCTCCACTCCTTGTCTTCTCAGCTATTCTCAGCTCGCTGAGGTCACACAGATACAAGCAGGGGACAGCTACAGTTCAGCCGTCACAGCAGGTGGAGAGCTGCTTCTCTGGGGTCAGatcccctgtgtgtcccgggTCAGTGATCATCCAGGCCTCAAAAAGCTCTGGACCCCACAGCCTGTTCCACTGGCAGGCAGAAAGGTGTGTGATGTGGCCTGTGGTACCTGGCATATGATGGCCCTCACCACAAcaAGCCGAGAGAAGAACAGTGAATGTGCTCACTCAGAAACTGAAGCTCGCTTCAGAGACCTTGTCAGTGATCCCCTGCCGACGGAGCACACcgagaaagaaaacacagtgcAAGACTCCAGGCAGGTTCAACACAAGCTGCTTCACGGTCTGGAGAGACCAGAGGGCTCTGAGGAGTACGAGAAGGATGAAGAAAGTGAGAGTGCAGAGGAAGACGAAAGACTAAACAAAGAGGAGGGAGATGGAGCGTTACACGAATCAGCGTTTGCCATTGCCAGGTCTGCAACGGGGATGGACAGGAGAGGAAATGGCCACTCATCAATCAAATCCGACCAAGGGGATGAGAGGGAGAGTTGCAGGACAGCTGCAACGTGGGAGCTAAGGAAAGAACCATGCAGAAGCAGAGGAAGCAGAGATGTTGTATTCACCACTTTGCATCTGTTACCCAGGTCAGAAGGAGAGCAATGCAGGCCCACTGCCAGCAGCTTGCCCCGGCTACTCACAGGACATCAGGCTCATAGCAGGGTTTTAGATGAGGTTCGGATGGTGAGTTTAACGATATGATCCCAGAGAACAAATCCAAATGATCCAGCTTGTCGCTAGTATGTTTCACGTATGTCTTCAAAAGACAACAAGCATCTGGGTTTGCACACATTTAatcttatttctttttctttttcaaatttgTCTCTTTAAGTACAATCCATTGCTTTTGTTAGATAGTTAGACAGTAGAGAGTGAATGGAAACATCTGGATGACCCGGTGATGTCACTGGGCTGCTGGCCCTTAACCCTTTATTTGTTATACTTACTATGAATTGTCCTTCTACAACATGCCTGAGAGAGCTAAGTGGTTTTGTACTTTGAGAGGCAGTATTACATCACTTTGGCTGAGATTAAAGAAGCAAGTATACATTAGCTGGCTGGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83037 lncRNA downstream 10739 16117227 ~ 16141681 (-) True G62001
TU83032 lncRNA downstream 52037 16096421 ~ 16100383 (-) True G61998
TU83027 lncRNA downstream 169009 15982876 ~ 15983411 (-) True G61996
TU83024 lncRNA downstream 213172 15937976 ~ 15939248 (-) True G61993
TU82980 lncRNA downstream 375282 15773679 ~ 15777138 (-) True G61956
TU83105 lncRNA upstream 52782 16505270 ~ 16506122 (-) True G62065
XR_005639591.1 lncRNA upstream 54558 16507046 ~ 16508251 (-) True LOC120561369
XR_005639585.1 lncRNA upstream 96129 16548617 ~ 16550673 (-) True LOC120561322
XR_005639577.1 lncRNA upstream 110982 16563470 ~ 16564460 (-) True LOC120561239
TU83153 lncRNA upstream 157085 16609573 ~ 16663861 (-) False G62103
XM_039802851.1 mRNA downstream 19474 16124488 ~ 16132946 (-) False nr2f1a
XM_039802850.1 mRNA downstream 19476 16124488 ~ 16132944 (-) True nr2f1a
XM_039802840.1 mRNA downstream 341000 15777245 ~ 15811420 (-) True slf1
XM_039802843.1 mRNA downstream 341259 15778413 ~ 15811161 (-) False slf1
XM_039802842.1 mRNA downstream 341259 15782020 ~ 15811161 (-) False slf1
XM_039804539.1 mRNA upstream 59889 16512377 ~ 16519316 (-) True aqp3a
XM_039803786.1 mRNA upstream 79164 16531652 ~ 16546472 (-) True nol6
XM_039804382.1 mRNA upstream 94793 16547281 ~ 16548567 (-) True LOC120561320
XM_039802920.1 mRNA upstream 570050 17022538 ~ 17055682 (-) True LOC120560423
XM_039802921.1 mRNA upstream 570050 17022538 ~ 17049645 (-) False LOC120560423
XR_005639521.1 other downstream 750096 15369827 ~ 15402324 (-) False LOC120560838
XR_005639520.1 other downstream 750096 15369827 ~ 15402324 (-) False LOC120560838
TU82789 other downstream 919731 15225095 ~ 15232689 (-) False LOC120560831
TU82785 other downstream 934011 15216550 ~ 15218409 (-) False sdhaf1
TU82671 other downstream 1111056 15036979 ~ 15041364 (-) False tti2
TU83104 other upstream 52138 16504626 ~ 16505067 (-) True G62064
TU83119 other upstream 96134 16548622 ~ 16550256 (-) False LOC120561322
TU83120 other upstream 96134 16548622 ~ 16551175 (-) False LOC120561322
TU83121 other upstream 96134 16548622 ~ 16550256 (-) False LOC120561322
TU83278 other upstream 671508 17123996 ~ 17124477 (-) True G62194

Expression Profile