RNA id: XM_039803780.1


Basic Information

Item Value
RNA id XM_039803780.1
length 1168
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC120560890
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 16468310 ~ 16475905 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTACCGTTGGTAAGTTTGGGAAACAGAGCGTGTTTTGGCTGATATACCTAAAATGTCTCCGATTAAGGACTTATGTCTGGCTTGTGAAGCTATCAACGAAGAAGCAACTTTTTCTGAAGGAGACACTGTCGCAGGCACACTCACTTTCACTTTGAAGAAAGAAACCAAAGTGAAGAGTGTGATGGTGAAAGCCAAAGGGGACGCGAACGTATCCTGGTCAGAAGGCAGCGGAGACGACCGGAGATCTTACACCGACCACAGGAGATACTTTAAACTAAAAGAGTACTTAGTTGCAGAAAATTCCGAAGGCAGTGTTCTTCCCCAAGGAGTCCATTGCTTTAAGTTCAGGTTTCAAATTCCACAGGGagATATGCCATCATCCTTCAAGGGGTTTCATGGAAGGATTGTCTACATGCTTGAAGCCAAGGTGTCCAGGGGCTGGCTGAGGCGTTCTCGAGTACAAACAGAGTTCAATTTTGTTTCAAAGTCCTTTCCACACCTTGGCCATGTAATGTGTCCCCAGTCTGGTTCAGTGGCTAAAGAAATCGGGGTTTTCTCCAAAGAATAGGTCCAACTGTCTGCTACCGTCAACACAAAGGTTTGCTCTCCAGGTGACACTGTATCTGTTGATGCCAAGATTTGCAACTCTTCTTCCAAAAAAGTGAAGCCCAAATTCAGTTTACAGCAGGAAACAGTGTACCGCGCCAGTGGCTCCACCAATTCTAGTGACCAAACTCTATGCAAAATAGTTGGAGAGACTATCGCACTGAACTCAGAGGAAACTGTCTCCTGCCAATTGAAGATTCCTGCCGATGCCATTCCCACACTCCATCATTGTGAAATCATCTCAGTTGACCATTACCTCAAGGTGTATTTGGACATCAGTTTTGCCACTGACCCAGAGGTGGTGTTTCCACTGGTCATCGTTCCTTCCAGCTTTGCCCACCCTTACCCTGGTGAGGCTGTGGGGCCTTACCCAGCTGGGGCCCCAAGTTACAGCGACTTCCCTCCCCCTGCTTTCCCTATTGGTCCTCATCCTGTACCTGCAGGTCCAGGTGCTTATGGTTACCCAGCAACGGATCACACTCAAAATGgtattttgtattcatgaaacagcaaaatttcaaagtggctcatttggtgcatatttttcaatgtagctcttagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83002 lncRNA upstream 269439 16123200 ~ 16198871 (+) True G61975
TU83008 lncRNA upstream 325511 16134594 ~ 16142799 (+) True LOC120560394
XR_005639478.1 lncRNA upstream 325511 16140139 ~ 16142799 (+) False LOC120560394
TU82993 lncRNA upstream 411605 16035451 ~ 16056705 (+) True G61968
TU82996 lncRNA upstream 417617 16048383 ~ 16050693 (+) True G61970
TU83073 lncRNA downstream 36274 16512171 ~ 16514043 (+) True G62033
TU83128 lncRNA downstream 91585 16567482 ~ 16567714 (+) True G62082
TU83132 lncRNA downstream 134580 16610477 ~ 16620136 (+) True G62085
TU83194 lncRNA downstream 420691 16896588 ~ 16939963 (+) True LOC120560795
XR_005639513.1 lncRNA downstream 429696 16905593 ~ 16943176 (+) False LOC120560795
XM_039804474.1 mRNA upstream 334 16461238 ~ 16467976 (+) True LOC120561380
XM_039804475.1 mRNA upstream 334 16461238 ~ 16467976 (+) False LOC120561380
XM_039802845.1 mRNA upstream 368826 15943698 ~ 16099484 (+) False fam172a
XM_039802849.1 mRNA upstream 368826 15943723 ~ 16099484 (+) False fam172a
XM_039802847.1 mRNA upstream 368826 15944275 ~ 16099484 (+) True fam172a
XM_039804482.1 mRNA downstream 1601 16477498 ~ 16484029 (+) True LOC120561386
XM_039804483.1 mRNA downstream 11497 16487394 ~ 16492635 (+) True LOC120561387
XM_039804459.1 mRNA downstream 19338 16495235 ~ 16504736 (+) True LOC120561368
XM_039803789.1 mRNA downstream 57019 16532916 ~ 16534175 (+) True LOC120560897
XM_039803788.1 mRNA downstream 61229 16537126 ~ 16540185 (+) True LOC120560896
TU82943 other upstream 691169 15763114 ~ 15777141 (+) True mctp1a
unassigned_transcript_261 other upstream 849166 15619073 ~ 15619144 (+) True trnac-gca_21
unassigned_transcript_260 other upstream 849495 15618744 ~ 15618815 (+) True trnac-gca_20
unassigned_transcript_259 other upstream 850354 15617885 ~ 15617956 (+) True trnac-gca_19
XR_005639522.1 other upstream 1033867 15431708 ~ 15434443 (+) False zgc:101664
TU83072 other downstream 57432 16533329 ~ 16534149 (+) False LOC120560897
XR_005639579.1 other downstream 1522789 17998686 ~ 18009318 (+) False cmya5
TU83701 other downstream 1854808 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 1931490 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 1940231 18416128 ~ 18419590 (+) False tbx5b

Expression Profile