RNA id: TU83132


Basic Information

Item Value
RNA id TU83132
length 3224
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G62085
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 16610477 ~ 16620136 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagattgtgTGAGACATGTGGTGTGTTCTGCCGCTCTCCATGGGAGGTGTGTTAAAGTCATGCTCGACTACCCAAATAGAAGTCAGATAGGATCTCACGAGACCCAAGTGAGAATTGAGCAGATTCCTTtctgaaaagagtgaaagtgGAGTAAACGTGAACTCAGTTTTAGTCAGCATTACATGCAACCCACATAATTTGGAATTACGCCACAGATATTTCAAAGTCATCCCAGTGCTTTGCTCTGggaatttaaaaattaaacccAAAGAGGTGCAAGTTGgcggacagttttttttatggaCTTCCATGGCCTCCTTTTAGTTTCCTATAGAATGGATGGCTAATAGATTTGTCTTATTGATAGTTGGTGTGACCCTAATAAGCTTCGTATCTTAATCTGTGTGCCTTATAGTTGGACAGAACTAAAAACTAGTTTGGGATTTTAGCAAACCTGCAGACAGGTTCTGCAGTGGTTGACATGATCGATAGAGTAAACAATCTCTATGATAATTTTAGAACTGTAAAACAGATTATGGTGTTGCTTTATGCACTCTCAGCCATTATCCttcttgagttttttttttttttttttttagcaaactgGAGCCATGCCAGCGAAGAATCTTTAGGCCTGCTGCTTGTTTTTATGGACGTACAAACGGCCTTAAATAAAACTCTTCGTAGACTGTAGTACAGTAGGTTGGTCTAATCATATAGCCTTGTGTAGTATGTTTTCTACAGTGGGAATTATTTGGATGTAAATGGACTCGCGCCTTGGTTCGGAAATCTCCACTGACCAGGTGATTTAGAGGTAGCAATTAAATTGACTAACAGGTTGATTCCTGTAATTTAACTTCAAACCACTGACTTTGGGAAAGCAAAGCTTTTTAAAGACCACTGGCTGGCCTGTGTGCTGGGAGAGTGCAACCACTTTGATGAAATGTGGTAAATTTGCATGGTGGCCTAACTTTGTCATTATAATGACACTTGGTGTTGGAATgtactttcttcttttttgtttttgactaTACCTTTCTGTGCTTAGCATGAATTATTCCTTATGTAAGATTTTTATTTAAACCTGATGATTGTAGCCTGATATTTCCACGAAGGTCTTTTCAAAATTCCCCCACAACTCAATAACATGAATAACATGACTTGTCCAGTTTCTTGTTTAAGGCCTAGTTGGCACTGAAGCCCACAGTAGCTCTCGTCTTGCTACTGTATGCGGCTTAATGCACAACTCAGTTTGCTATAAAAACTCAGCACAGCTCAAGGTAGCATCACTAATtatacaactttaaataatatgcTAGGATATTTGCTTGACAAAATAATGCAGATGATCTGTTGCAGCTGTGCGGCTGTTCCATTTATTCTGTTACTGTCGTTATTACAATCAATCAAGCTTATTCTTGGGATTTTTAAGATATTGGGAACAGGTCGTGAAACTTAAAATCgttaaaagtaaaattttaaTTGAAATCAACTATTGTAATGCACATATTTTAAGAATGTTCTAAATGGCTGAAAGCCAGGTGTAATGTTTGGGCTTTAGCCTGTTTCTGGGGTTACACAGAGGCTTCTGAATATCCAGAACTGTGTTCAGTGTTTCTTAACATTTGGTTGGGACCCTATCCGGGGTCACTTGGAATGCATATGGGGTGGTGggaaataaaactgaaatatttaATATGTATTACATTAAATACTGTAGgttttaaatatacagtatgtcctaaTCACTATAATACTTATTTGGATATTTGAACTTCCAGTTCACAACAACTTCAGTATTCTCTTATTATTGGTATAAATCATGGGCTGTAAAAGGTTGAGAAACCCTGAtatacagagagggagagatggagatgcCAAATTTTGAACCCTGTTAGCTTTATTCTGCCCTCAATATTTGCTCCACGCTGACCCCAACAGGCCAAAGTCACATTCTGATGTAGGATGTAGGGTTGTGTTGTTCATCTGGATTGTCTTGTTCTATCGTATCACATCCTTTTCACTGTCACATTCTCCTCATTTATTTGAGGTGGGGCTTTTCTTCCTTCTTAGCAGGCCTGACCTTCCTTTTTAAATGTGAGGCCTAGTGACTGAGAGAACACATTGTTTTTAGTCGTTGGTGTCTCCTTTCCTGTGCCTTCAGTGGAATCTCACTCTTTTGGCTCTGTACAGGCTGGCGGCAATGCACCTGCAGCCttctgggtttaaaaaaaaaataaaaaattgattaAGCCAAGAAAATACACAAGTGAGCACAGAAATAAAAGTAGGCAGCTTTCTTTAATGTACAGTATCTCAGCATAGTTACTGGCTATTTGGGTCATAGTGATAACTTCCAATGATAACGCATAACGTTCAGTATGTAATATCATCTATGCTAAAGCTACGCAACTTAAATTATGAAATGACCAAGAAACCCAGCAAACCAGCAGttttaaaacaatgttttcGCACTCTTTCAGGTGCCTGCACTTTCTATTATGTAGCCTAATACAACGTTTTTGATACGTATGCTAAGTCTTTATATTTACCAGTGTTCTTGATCACTTATCACTTTTCCAGTTTCTCATGATCTGTTTCTCAAATTCAGTAGTATACCCTATTGCTTCCACTATTTAGCTGCAATGTACTATGTTGCAATCATGCATGAAGTCAGTGCATTCTAAGTTGGGGGAGCAACATCTGGGGACTACTGTTTGGATTAAAGGCAGATATTAGCTATGACAACTATATATATTATGCTTTAATGAAGATAGTTGTAAATTATTTGAGAAAAGTTGAGTCACAGCTTGAATAACCTCTCACCTTAGAACTGCTCACCCTGCTGTATCTATTTGCTAGGCTGGTGTATACATAGGATTTTATGCGCAGAGAGACCCAGGACAGGGAGAGTGTTCATATAGACATACATGGTGTGATTAATCCCTGGTCTATACTGTAATTTTTAAGTGGAtcgtatatatactgtatagtatTGTTATGCACTTTTGTTTCCTTTGACTCATATGAGTTTTATTAACATTTACTGCTCATGGTATCGTGTTTATTacaataaaaaggcaaaagAAAGAGCACATCACACTCACAAACTATTAAGGGCtttcaagaaaataaaacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83128 lncRNA upstream 42763 16567482 ~ 16567714 (+) True G62082
TU83073 lncRNA upstream 96434 16512171 ~ 16514043 (+) True G62033
TU83002 lncRNA upstream 411606 16123200 ~ 16198871 (+) True G61975
TU83008 lncRNA upstream 467678 16134594 ~ 16142799 (+) True LOC120560394
XR_005639478.1 lncRNA upstream 467678 16140139 ~ 16142799 (+) False LOC120560394
TU83194 lncRNA downstream 276452 16896588 ~ 16939963 (+) True LOC120560795
XR_005639513.1 lncRNA downstream 285457 16905593 ~ 16943176 (+) False LOC120560795
TU83185 lncRNA downstream 285469 16905605 ~ 16942729 (+) False LOC120560795
TU83182 lncRNA downstream 285677 16905813 ~ 16942729 (+) False LOC120560795
TU83197 lncRNA downstream 332789 16952925 ~ 16953637 (+) True G62126
XM_039804383.1 mRNA upstream 55965 16550250 ~ 16554512 (+) False wdr54
XM_039804384.1 mRNA upstream 55965 16550257 ~ 16554512 (+) False wdr54
XM_039804386.1 mRNA upstream 55965 16550325 ~ 16554512 (+) False wdr54
XM_039804385.1 mRNA upstream 55965 16550356 ~ 16554512 (+) True wdr54
XM_039803788.1 mRNA upstream 70292 16537126 ~ 16540185 (+) True LOC120560896
XM_039803498.1 mRNA downstream 8385 16628521 ~ 16663697 (+) True si:dkey-40c11.2
XM_039803499.1 mRNA downstream 8391 16628527 ~ 16663697 (+) False si:dkey-40c11.2
XM_039802676.1 mRNA downstream 204679 16824815 ~ 16895188 (+) True mef2cb
XM_039802674.1 mRNA downstream 204679 16824815 ~ 16895188 (+) False mef2cb
XM_039802678.1 mRNA downstream 215338 16835474 ~ 16895188 (+) False mef2cb
TU83072 other upstream 76328 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 134572 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 134580 16468323 ~ 16475897 (+) False LOC120560890
TU82943 other upstream 833336 15763114 ~ 15777141 (+) True mctp1a
unassigned_transcript_261 other upstream 991333 15619073 ~ 15619144 (+) True trnac-gca_21
XR_005639579.1 other downstream 1378550 17998686 ~ 18009318 (+) False cmya5
TU83701 other downstream 1710569 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 1787251 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 1795992 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 2041021 18661157 ~ 18681161 (+) False acacb

Expression Profile