RNA id: TU83153


Basic Information

Item Value
RNA id TU83153
length 1194
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G62103
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 16609573 ~ 16663861 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCCCCCTGATATTTAAAACAGGCACACGCCATTAACATGACGAAATATTAGAGACACTATACATTAAAATTTGAAAGAACGTGCACACTCAAAAACAGCTGTCAATaatgattgtttgtttaaaaccaTAAACATGAAGAATCAAACAGGACAGGAGACAAACAGTTTAAGGCACTTTGAGTTCATAGATGCTATATATTTGTAAGTTTTTGAGTAAATACAAAGAAAATACATACCACCAAACAAGCATACAGCATACAAACATACAAGCCAAGTATAGAAAAGGAGAAGAtctttgatgttgttttatacaTTATTATATACAGTGCAGATTATTGAGATATTACAGAAGATTACAAtaggaagatttttttttcatgtctgtTCGACGGAATGCTTTAATTTCTTAAAATCTAGGAAAAATTAAGATGACACGTGGTCACAAAAGGTGTGAAAGGCCGTCACCATATGAACAAAATACAGCCTATCTTAAAGTGTGAAAGAGAGATACAGGTGTCGACACAGTGCCTTTTTCCCTCTGCTTGTTTATCTTTTGTTATGCTGCTGTTCTGGTCATTAAAATGTGCAGTGAGACTGTCAGTAACTAAAAAGTGTGACACATAACTCAGAAAATACAGGAAGATGATTATAAGAGGATGTCTGATACATGTATCTTGATTATATATACCAGTCAAGAGCAgaacaattttttttagcaaTGTAACACACAAAGCAAACGGTGAGCAGAATGGGATGCTTACAATACACTATAAAaatctgtttgtgtttctcaCAATAAAAGCAAGTTTGTGATCCTTTGTCATCGTGATCTGATCCCTCCCACCATCATTCCTGCTGTATCTCAAAAGGAAATAAGTTATTTTGGTCCAGGAAAAGGTCTCTGCTATTTTATCCAAGAAAATGAGGCTGGGTAATTTCTGCATACTTGTGAGACTATTTTgttttgctgaaaaaaaaaaccatcaaaATAGagagtcacacttttctttaTGCTTTCTACAAAACAGGGAGTCACATTTTTCTTTATCCTTCCTACAAAATAGAGAGTACAAAGTTTCAGTGGGAGGattaaggtaaaaaaaaaaaaaaacatgcacaaatGTGAGGGGAGATGGCATccctgagtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggtgatggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639577.1 lncRNA downstream 45113 16563470 ~ 16564460 (-) True LOC120561239
XR_005639585.1 lncRNA downstream 58900 16548617 ~ 16550673 (-) True LOC120561322
XR_005639591.1 lncRNA downstream 101322 16507046 ~ 16508251 (-) True LOC120561369
TU83105 lncRNA downstream 103451 16505270 ~ 16506122 (-) True G62065
TU83054 lncRNA downstream 453884 16153049 ~ 16155689 (-) False LOC120560105
TU83170 lncRNA upstream 11831 16675692 ~ 16686359 (-) True G62114
XR_005639541.1 lncRNA upstream 80424 16744285 ~ 16745598 (-) True LOC120560958
TU83198 lncRNA upstream 151532 16815393 ~ 16818043 (-) True G62127
TU83201 lncRNA upstream 157211 16821072 ~ 16821694 (-) True G62130
XR_005639473.1 lncRNA upstream 157944 16821805 ~ 16835287 (-) True LOC120560320
XM_039804382.1 mRNA downstream 61006 16547281 ~ 16548567 (-) True LOC120561320
XM_039803786.1 mRNA downstream 63101 16531652 ~ 16546472 (-) True nol6
XM_039804539.1 mRNA downstream 90257 16512377 ~ 16519316 (-) True aqp3a
XM_039802276.1 mRNA downstream 157085 16152420 ~ 16452488 (-) True LOC120560105
XM_039802850.1 mRNA downstream 476629 16124488 ~ 16132944 (-) True nr2f1a
XM_039802920.1 mRNA upstream 358677 17022538 ~ 17055682 (-) True LOC120560423
XM_039802921.1 mRNA upstream 358677 17022538 ~ 17049645 (-) False LOC120560423
XM_039802923.1 mRNA upstream 419706 17083567 ~ 17085812 (-) False LOC120560425
XM_039803149.1 mRNA upstream 818779 17482640 ~ 17535168 (-) True LOC120560528
XM_039803288.1 mRNA upstream 870622 17534483 ~ 17568014 (-) False LOC120560614
TU83120 other downstream 58398 16548622 ~ 16551175 (-) False LOC120561322
TU83119 other downstream 59317 16548622 ~ 16550256 (-) False LOC120561322
TU83121 other downstream 59317 16548622 ~ 16550256 (-) False LOC120561322
TU83104 other downstream 104506 16504626 ~ 16505067 (-) True G62064
XR_005639521.1 other downstream 1207249 15369827 ~ 15402324 (-) False LOC120560838
TU83278 other upstream 460135 17123996 ~ 17124477 (-) True G62194
TU83293 other upstream 814445 17478306 ~ 17480814 (-) True G62209
XR_005639495.1 other upstream 877535 17541396 ~ 17568014 (-) False LOC120560614
XR_005639575.1 other upstream 934227 17598088 ~ 17605120 (-) False LOC120561236
XR_005639576.1 other upstream 934227 17598088 ~ 17605120 (-) False LOC120561236

Expression Profile