RNA id: TU83197



Basic Information


Item Value
RNA id TU83197
length 713
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G62126
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 16952925 ~ 16953637 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGTACGTGGTGAGACTTTTATTGtaattatttcacactttttatcATATGAGAAAAATCAATCATATCACATTATGTTCACAATATTTCTTAAcccaaaaacattttgaaacccCATTTATTCAAAATTTTGTTTATGTCTTTAAGACATTCTAATTATTAATGAAAATGTATTCTAGTTTTGGGGATAAGGCAtacacagtcacagtcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtctttgtCACCGACATTAACAACATTACAACAGCAGCAAtgcaaatattacagtatgccaCAAGAAATTGAATTAATTGTCCCAAAAAACATGCAATATAATTATATACCACAGTTTGGAAGGCACTGATTGTGTACAGCCCTGGTCCTGAGTTGTAGGCGTGTATAACTGCTCTCGCTTCTCACTCACtaccgcaaaaaaaaaaaaaaaaaacagaaagaaagaaatcctCATCAATGCAAATTAGAGCCCATAACCTGGAGAGCCTTGCTTGAGTCACCGGTTTTCCAAAATGCCAAAATCACAGGCTTTCACCTCCAAATCTTGTTGTCATACACGACTACAGATGCTCCATATTAGCACAGGACAGTCATATCCATGGATTAGTCTGCAGTCACTTTAAAAACCGTCTCCACACTCAGGCTgccacaagagaaaataagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005639513.1 lncRNA upstream 9749 16905593 ~ 16943176 (+) False LOC120560795
TU83185 lncRNA upstream 10196 16905605 ~ 16942729 (+) False LOC120560795
TU83182 lncRNA upstream 10196 16905813 ~ 16942729 (+) False LOC120560795
TU83194 lncRNA upstream 12962 16896588 ~ 16939963 (+) True LOC120560795
TU83132 lncRNA upstream 332789 16610477 ~ 16620136 (+) True G62085
TU83267 lncRNA downstream 124266 17077903 ~ 17084516 (+) True G62184
TU83270 lncRNA downstream 137619 17091256 ~ 17091484 (+) True G62186
TU83272 lncRNA downstream 139732 17093369 ~ 17093740 (+) True G62188
TU83277 lncRNA downstream 169969 17123606 ~ 17124484 (+) True G62193
TU83280 lncRNA downstream 245752 17199389 ~ 17199599 (+) True G62196
XM_039802682.1 mRNA upstream 57737 16835483 ~ 16895188 (+) False mef2cb
XM_039803345.1 mRNA downstream 5820 16959457 ~ 16978395 (+) True tmem161b
XM_039802922.1 mRNA downstream 64940 17018577 ~ 17024968 (+) True ccnh
XM_039803855.1 mRNA downstream 332011 17285648 ~ 17414595 (+) True LOC120560947
XM_039803856.1 mRNA downstream 332013 17285650 ~ 17414595 (+) False LOC120560947
XM_039804546.1 mRNA downstream 518626 17472263 ~ 17480557 (+) True LOC120561427
TU83072 other upstream 418776 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 477020 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 477028 16468323 ~ 16475897 (+) False LOC120560890
TU82943 other upstream 1175784 15763114 ~ 15777141 (+) True mctp1a
unassigned_transcript_261 other upstream 1333781 15619073 ~ 15619144 (+) True trnac-gca_21
XR_005639579.1 other downstream 1045049 17998686 ~ 18009318 (+) False cmya5
TU83701 other downstream 1377068 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 1453750 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 1462491 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 1707520 18661157 ~ 18681161 (+) False acacb

Expression Profile