RNA id: TU83289


Basic Information

Item Value
RNA id TU83289
length 695
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G62205
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17414652 ~ 17415346 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AgctatgtttttatttgtcaaaccgaaagagcttttttttttaaacacattttttaactATACACAGTTTCTCACTCTCCTCCGCAGGCTTGAAGCTAACCAGCATTATAATAGGTACATTTTCTGAATAGAGATTGACACTCAGACTGAGGAGGTAAGAAATAATACGAGCagacacaaaaatacaaagacAGGATGAGTTTTCACTCTGCTCCCTTTTCGAACATGTGAGATGAAGTTTTACAATGCACAAGACAATCGATAGCGAGTACAAAGTAAAGGCTATTAGATCTTAATGTTACCTAATATTAGATCTTATGGTATGCAAGAACATAATGTGCCTGTGGAAATCTGTGTTATACTGTACTGTTCAAACTCATACATCATGCAAACTTCCTCAAAGCTTTGTAGCAGGCCTGCTGACAGGAAGCTGACTACAAAGATCAATATATAATTATTTGGCAATCGACAATTGAAGAGTGCACAAATAATCTGTTAATTTATCATGTGTCCATCAACCTACGGAATGACAGTCACTGATTCACACCAATAACAATGTTCACATATTGGTAATGTACAGCAAAATCTTTCAGTGTGACTTACATTGAAGTACAGTAACACGAGTAAACGTTTCCAAGATATCCTATTGTGATTTGCCAAACCAGAATAAAATGTGCTATACTCAGTTGAAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83269 lncRNA downstream 328831 17083479 ~ 17085821 (-) True LOC120560425
TU83264 lncRNA downstream 348196 17065836 ~ 17066456 (-) True G62183
TU83206 lncRNA downstream 528703 16882821 ~ 16885949 (-) True G62131
XR_005639473.1 lncRNA downstream 579365 16821805 ~ 16835287 (-) True LOC120560320
TU83201 lncRNA downstream 592958 16821072 ~ 16821694 (-) True G62130
TU83321 lncRNA upstream 160295 17575641 ~ 17575949 (-) True G62230
TU83322 lncRNA upstream 160873 17576219 ~ 17576552 (-) True G62231
TU83447 lncRNA upstream 426373 17841719 ~ 17842452 (-) True G62318
XR_005639419.1 lncRNA upstream 481445 17896791 ~ 17899827 (-) True LOC120560086
XR_005639420.1 lncRNA upstream 481445 17896791 ~ 17899826 (-) False LOC120560086
XM_039802923.1 mRNA downstream 328840 17083567 ~ 17085812 (-) False LOC120560425
XM_039802920.1 mRNA downstream 358970 17022538 ~ 17055682 (-) True LOC120560423
XM_039802921.1 mRNA downstream 365007 17022538 ~ 17049645 (-) False LOC120560423
XM_039804382.1 mRNA downstream 866085 16547281 ~ 16548567 (-) True LOC120561320
XM_039803786.1 mRNA downstream 868180 16531652 ~ 16546472 (-) True nol6
XM_039803149.1 mRNA upstream 67294 17482640 ~ 17535168 (-) True LOC120560528
XM_039803288.1 mRNA upstream 119137 17534483 ~ 17568014 (-) False LOC120560614
XM_039803290.1 mRNA upstream 126050 17541396 ~ 17568014 (-) False LOC120560614
XM_039803287.1 mRNA upstream 126050 17541396 ~ 17568014 (-) True LOC120560614
XM_039803286.1 mRNA upstream 127736 17543082 ~ 17568014 (-) False LOC120560614
TU83278 other downstream 290175 17123996 ~ 17124477 (-) True G62194
TU83120 other downstream 863477 16548622 ~ 16551175 (-) False LOC120561322
TU83119 other downstream 864396 16548622 ~ 16550256 (-) False LOC120561322
TU83121 other downstream 864396 16548622 ~ 16550256 (-) False LOC120561322
TU83104 other downstream 909585 16504626 ~ 16505067 (-) True G62064
TU83293 other upstream 62960 17478306 ~ 17480814 (-) True G62209
XR_005639495.1 other upstream 126050 17541396 ~ 17568014 (-) False LOC120560614
XR_005639575.1 other upstream 182742 17598088 ~ 17605120 (-) False LOC120561236
XR_005639576.1 other upstream 182742 17598088 ~ 17605120 (-) False LOC120561236
XR_005639574.1 other upstream 182742 17598088 ~ 17605120 (-) True LOC120561236

Expression Profile