RNA id: TU83301


Basic Information

Item Value
RNA id TU83301
length 444
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G62217
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17515654 ~ 17516097 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

accacataccggaagtgatgaggtgttgttggtgagcgcagtcaatttgtgttgttgtgagtgagtatatggcgtgaatgaagtttatggtgactttacgtgtggtcggtgtttggagtttttatatgacgcggacctgacggaaacattggaaaaacagggaacgtatcgacagccgcggccggatcgaagctacagcaggggggcagctgagtccgtctgcagctgcaggacctggagctcactgcccattcctgggagccaaaaccgacaccacgcagctggagacccaggccgtattgctgggcccgctggagggaagggaagcccgggagaatcagatccaggactgaacggagcggactgtcacagcctgctgaagtttaaatcacaggtttcctaaagggagtctggcgggactcggactgtggacgacgaaacacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83298 lncRNA upstream 22455 17492892 ~ 17493199 (+) True G62214
TU83297 lncRNA upstream 22925 17492390 ~ 17492729 (+) True G62213
TU83288 lncRNA upstream 100305 17414652 ~ 17415349 (+) True G62204
TU83282 lncRNA upstream 101063 17413076 ~ 17414591 (+) False LOC120560947
TU83280 lncRNA upstream 316055 17199389 ~ 17199599 (+) True G62196
XR_005639496.1 lncRNA downstream 20745 17536842 ~ 17544908 (+) True LOC120560616
TU83311 lncRNA downstream 51984 17568081 ~ 17572701 (+) False tmem167a
TU83396 lncRNA downstream 241758 17757855 ~ 17758057 (+) True G62280
TU83414 lncRNA downstream 297492 17813589 ~ 17813813 (+) True G62294
TU83482 lncRNA downstream 422930 17939027 ~ 17940846 (+) True G62344
XM_039804546.1 mRNA upstream 35097 17472263 ~ 17480557 (+) True LOC120561427
XM_039803855.1 mRNA upstream 101059 17285648 ~ 17414595 (+) True LOC120560947
XM_039803856.1 mRNA upstream 101059 17285650 ~ 17414595 (+) False LOC120560947
XM_039802922.1 mRNA upstream 490686 17018577 ~ 17024968 (+) True ccnh
XM_039803345.1 mRNA upstream 537259 16959457 ~ 16978395 (+) True tmem161b
XM_039803291.1 mRNA downstream 51916 17568013 ~ 17572705 (+) True tmem167a
XM_039803150.1 mRNA downstream 75848 17591945 ~ 17593975 (+) True LOC120560529
XM_039803297.1 mRNA downstream 125446 17641543 ~ 17704206 (+) True si:ch211-130m23.3
XM_039803300.1 mRNA downstream 194093 17710190 ~ 17712781 (+) True LOC120560622
XM_039803298.1 mRNA downstream 196823 17712920 ~ 17715065 (+) True LOC120560621
TU83072 other upstream 981505 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1039749 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1039757 16468323 ~ 16475897 (+) False LOC120560890
TU82943 other upstream 1738513 15763114 ~ 15777141 (+) True mctp1a
unassigned_transcript_261 other upstream 1896510 15619073 ~ 15619144 (+) True trnac-gca_21
XR_005639579.1 other downstream 482589 17998686 ~ 18009318 (+) False cmya5
TU83701 other downstream 814608 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 891290 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 900031 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 1145060 18661157 ~ 18681161 (+) False acacb

Expression Profile