RNA id: TU83475


Basic Information

Item Value
RNA id TU83475
length 1243
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G62339
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17931742 ~ 17933468 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGTCTATTTATTTGGATAACTCATTATCACAAAAGCCGTTTAAATGAAACACATGAATCTTTATTACGTCATCCAGCATTACATCCGGTGCAAACACTGAGAAACAGAACCATCGGGAGATCGGTGGTCTTCACTATACATTTATTGATAGCAGTTTTTTCTAGTTTCAGTTTTATAACAAAGTGTTAAATGGGTGgaaaacatgtttgtttttttacgttAAGTATGAGCTTTTAAGTCAGTGGCCACGTAGAACGACATGGCACAAACTGAAGTAAACTACATGTAAAAACCTCTCAGGGACACAGGGAAAAGAACACAATGTGGTTAAAGGCTTCTTCCATTCTGGCAAAAGCTCTgagaaggaagaaagagaagagaccACTTGTAatgaaataactttacaatgtcaACGGAGGACCTAGAAGCATGGAAACTGAGGACAGTGGCGTACATAAGCTTTCACACAGAGTGCACATGCAGACATGTCAGCCAGAAATCAAATACTGGTTTTGTGCAGTTAAACCTTAAAAACATATTCAATGAAGATCTCTTCTGAAACCAGGTCAAAGTATTCAGTTTAAAGAAAGTACAAAcaagtataaaaagaaaataatttaatgAGAACAGAGAGGGCAGACTAAACATTCTTcacaaaaggaaataaaactaTTTTCCTTCCTACGTTTTCTAGTGAGACCATAGTGGGGAACAGCCAGTTTTGTAAGGAGAGGGATCATAACAAATGCACCTTGAGCCTGTTGGTACATCAGAAAGTCCTTTTATTCGTATGTTCACAGCTGCTAGAGACAGCCTGAGTTGTGCCGAACATCTAGTGGTTATGCTTCTGTATGTGCCACTTAAATCTCTTCAGCCTCTAAAGAGCACGTGGCCTTTTGGGATTGATCTGCTTACTGGCTTGCTCCTCCTCCTGGAGTGTAGAGCGGAATGACTTCACTTTATCTCGGAGCTCGGTGAGGATATCTATCTTCTGGTCGAGGATCTGCTCCAGTTGAGTGGCGTACGACTCCACATCATAATCCACCTCCTCGGTCATCTCCAGCAGCACCTTCTCATCTTCCAGCCACCGGATGGACTCCTGCTCACAGAGGACACATACGAGTGCATATTCAGTGTATGACAGGTGGAGATGAAATCGTGCCAGAAGCACAGAAGAATGTCCTCTTAGATTTTACAGCCTTCACACAGATGGTACCAGTCCATTTGTTAGAAGGGTTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83469 lncRNA downstream 4787 17914926 ~ 17926955 (-) True G62333
XR_005639419.1 lncRNA downstream 31915 17896791 ~ 17899827 (-) True LOC120560086
XR_005639420.1 lncRNA downstream 31916 17896791 ~ 17899826 (-) False LOC120560086
TU83447 lncRNA downstream 89290 17841719 ~ 17842452 (-) True G62318
TU83322 lncRNA downstream 355190 17576219 ~ 17576552 (-) True G62231
TU83567 lncRNA upstream 121783 18055251 ~ 18055851 (-) False G62399
TU83570 lncRNA upstream 121783 18055251 ~ 18056143 (-) True G62399
TU83626 lncRNA upstream 301137 18234605 ~ 18235686 (-) True G62452
TU83677 lncRNA upstream 370689 18304157 ~ 18304356 (-) True G62493
TU83781 lncRNA upstream 396135 18329603 ~ 18329892 (-) True G62567
XM_039804606.1 mRNA downstream 22026 17901876 ~ 17909716 (-) False unc45b
XM_039804605.1 mRNA downstream 22383 17900473 ~ 17909359 (-) True unc45b
XM_039803673.1 mRNA downstream 35847 17853406 ~ 17895895 (-) True pip5k1bb
XM_039803674.1 mRNA downstream 48651 17853406 ~ 17883091 (-) False pip5k1bb
XM_039804298.1 mRNA downstream 106999 17815832 ~ 17824743 (-) True polk
XM_039803593.1 mRNA upstream 1908 17935376 ~ 17940540 (-) True dimt1l
XM_039803594.1 mRNA upstream 7134 17940602 ~ 17944550 (-) True cenph
XM_039803327.1 mRNA upstream 34110 17967578 ~ 17988335 (-) False homer1b
XM_039803326.1 mRNA upstream 34110 17967578 ~ 17983579 (-) True homer1b
XM_039803328.1 mRNA upstream 41264 17974732 ~ 17988335 (-) False homer1b
XR_005639516.1 other downstream 35845 17859355 ~ 17895897 (-) False pip5k1bb
XR_005639575.1 other downstream 326622 17598088 ~ 17605120 (-) False LOC120561236
XR_005639576.1 other downstream 326622 17598088 ~ 17605120 (-) False LOC120561236
XR_005639574.1 other downstream 326622 17598088 ~ 17605120 (-) True LOC120561236
XR_005639495.1 other downstream 363728 17541396 ~ 17568014 (-) False LOC120560614
unassigned_transcript_262 other upstream 26345 17959813 ~ 17959884 (-) True trnaq-cug_5
TU83669 other upstream 359788 18293256 ~ 18296678 (-) False LOC120560503
XR_005639489.1 other upstream 365433 18298901 ~ 18303862 (-) False fancg
TU83796 other upstream 444134 18377602 ~ 18380502 (-) True G62580
TU83799 other upstream 449537 18383005 ~ 18386269 (-) True G62582

Expression Profile