RNA id: TU83669



Basic Information


Item Value
RNA id TU83669
length 692
RNA type TUCP
GC content 0.48
exon number 5
gene id LOC120560503
representative False

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18287289 ~ 18296704 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGGTCTTTCGTGTGAAATCACAGAGAACGTCGAGTAACGAGAACCGGTTAAGCCTCTTAAACATTTAGCTagaatttctttatttattaaaagtaaTCCAGGTGGACAACCATGGCCTCGGGAGGGGAATCCAAAAATGATGATCTAGCCACTGCAATTCTGAAACAGAAGAGCAGACCCAACAGACTGATTGTTGATGAATCCATCAATGAAGACAACAGTGTGGTCTCTCTATCTCAGACCAAGATGGACGAGCTGCAGCTCTTCCGTGGAGACACAGTGCTGATGAAAGGAAAGAAGAGGCGGGAGACTGTGTGCATTGTGCTGTCTGACGACACCTGTTCTGATGAAAAGGTTCGCATGAACAGGGTGGTCCGCAACAATCTGAGGGTCAGACTGGGTGATGTCATCAGCATTCAGCCATGTCCTGATGTGAAGTATGGAAAGAGGATCCACGTCCTCCCAATAGATGACACAGTAGAAGGAATTACTGGCAACCTGTTTGAGGTCTACCTGAAGCCATACTTTCTGGAGGCTTACAGGCCAATTCGCAAAGGTGATATTTTCCTGGTCAGAGGAGGCATGCGTGCTGTGGAGTTCAAGGTGGTAGAGACTGACCCCTCTCCCTACTGCATTGTTGCTCCTGATACAGTCATCCACTGTGAGGGAGAGCCAATCAGGAGAGAGGTGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83626 lncRNA downstream 57570 18234605 ~ 18235686 (-) True G62452
TU83570 lncRNA downstream 237113 18055251 ~ 18056143 (-) True G62399
TU83567 lncRNA downstream 237405 18055251 ~ 18055851 (-) False G62399
TU83475 lncRNA downstream 359788 17931742 ~ 17933468 (-) True G62339
TU83469 lncRNA downstream 366301 17914926 ~ 17926955 (-) True G62333
TU83677 lncRNA upstream 7479 18304157 ~ 18304356 (-) True G62493
TU83781 lncRNA upstream 32925 18329603 ~ 18329892 (-) True G62567
TU83782 lncRNA upstream 34706 18331384 ~ 18332396 (-) True G62568
TU83785 lncRNA upstream 58564 18355242 ~ 18357753 (-) True G62571
TU83803 lncRNA upstream 98158 18394836 ~ 18397946 (-) True G62586
XM_039802613.1 mRNA downstream 110351 18173443 ~ 18182905 (-) True rgmb
XM_039802611.1 mRNA downstream 122498 18163106 ~ 18170758 (-) True erap2
XM_039802610.1 mRNA downstream 130929 18147120 ~ 18162327 (-) True LOC120560293
XM_039803154.1 mRNA downstream 227859 18059560 ~ 18065397 (-) True cdk7
XM_039803165.1 mRNA downstream 242799 18029439 ~ 18050457 (-) True serinc5
XM_039803087.1 mRNA upstream 915 18297593 ~ 18303857 (-) False fancg
XM_039803086.1 mRNA upstream 915 18297593 ~ 18303855 (-) True fancg
XM_039803090.1 mRNA upstream 16697 18313375 ~ 18321149 (-) True thoc5
XM_039803093.1 mRNA upstream 24876 18321554 ~ 18326918 (-) False tfip11
XM_039803091.1 mRNA upstream 24876 18321554 ~ 18326918 (-) True tfip11
unassigned_transcript_262 other downstream 333372 17959813 ~ 17959884 (-) True trnaq-cug_5
XR_005639516.1 other downstream 397359 17859355 ~ 17895897 (-) False pip5k1bb
XR_005639575.1 other downstream 688136 17598088 ~ 17605120 (-) False LOC120561236
XR_005639576.1 other downstream 688136 17598088 ~ 17605120 (-) False LOC120561236
XR_005639574.1 other downstream 688136 17598088 ~ 17605120 (-) True LOC120561236
XR_005639489.1 other upstream 2223 18298901 ~ 18303862 (-) False fancg
TU83796 other upstream 80924 18377602 ~ 18380502 (-) True G62580
TU83799 other upstream 86327 18383005 ~ 18386269 (-) True G62582
TU83818 other upstream 143231 18439909 ~ 18442825 (-) False iqcd
TU83834 other upstream 193194 18489872 ~ 18492390 (-) False zgc:158398

Expression Profile