RNA id: TU83744


Basic Information

Item Value
RNA id TU83744
length 2157
RNA type TUCP
GC content 0.47
exon number 2
gene id tbx5b
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18407348 ~ 18419590 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCACCTGCAGCACGGCCAACAGCCACAAGTCTACCACTGCACCAAGAGGAAAGtGGAGGAGAACTGCTCTTCAGGAAACCACCAGCACCCGTACAAGAAACCCTTCACCAGTAGCTCTCCAAGTGAGGGCGAGTCTTACTATCACCCCTCCTCCTATCCTCCCCCTCCACCTGGTCTGTCCGACATCCCACTCACTGACTCCCCCTACAGCTCAGACATGGTGCAGCGTCAGGCGTGCATGTTTGCCAGCTCTGAGCCCAGACTGGATGAACTCAACTGTACATCCTGGTCATACACCTGCCCACTCCCCTCTGCCATGACCCCCATGAAACCCTATCCACCTTACACCCCTCATCCTCCCTACAGCTCCAGCCCTCAGGGCTCTCGACTCAGCGCTATAGCCCACCAGAACTCTCCGCCGCTGGGAGAACACATCGACTACGACCCCTATCAGAGCCAGAGCTCTGGACCTCCATCCCAAAGCTCCCAAAACATTCAAAGCAGGCAGCTCAGCTCTCCGCTCAGAGAGTATCCTCGCTACACGCGCAACTTGTCTCCTCCTCTCTACCACACCctagagacgcacacacacatcaggtGTGGCGTCCCAGAATGGAGTGCAGCCTCCTAACTGAACCAGAGGACATACCCGAAAGAGAGATTCCTCGTCTCAAATTCAGTGACCCTTCTTTCTGCACTTCTGAAAGATGCTGCGCCATATACGGACTAAATATGATTTTAACTTtgtaaaataattgttaaaagTGTGATTTTTATGCTGTGTGAAGAGGTCTCATTTGTTCCTCGTGTTGCTCCCCTGTGCTGGATGGAGCAGTGGATTGTTAAAAACTGTACTTGGACATCCATGAAGCgtcagaaaaaaagagtctgaGCAGCACAATCAAAGTTGTACCTTATCACCTTTCCATAACCCAAAGACTGGTATCATCCAACTGTCTGCACTGTGAGCCCTGTTAAGGCCAGGCCGTGAACAGCACTAGGCTGTTTTCCTCTCAATGAATCCCACATTCTTCATTGTGAACAATGTAAATTGTGACACACTGTCAGACAGGCAGTAATATTTACTGACCAAAATAATCTCAGCTCTCACAGCAGCCTGagggaaactttttttttctaaagtggAGCAAAGCACAGCTCCATGCTCAGTCTCAGTGAAGGAGAAAAGgcatgagtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataaagtcTATGTCGGCTCAGCTCAAGGATACTATGAGTGCATTTTCAATGAGACAGCCAGTAGTAGCTGCAGGCACTGCACCATAGAAATAAACAGTTTGTTTAGACCATGCTACAGGCTGAAGGACCTGTAAACACGGCTTCCACTGCATTCTGGGTAAATGCACAACTCAGCGTCACACAGCTGCCACCGCTGTCCTCTCAGTCACccccagctgaccaatcagctttCTCCTTGCACTGAGAGCCAGCCAATGAACATGCACCTCTCTTTTATCCCCAGCTGACCATTCAGAGCTGGAGCgcagcatgtgtcatgtgtgcgtgtgtgtgttggcccatttttgtttgtttcagaaTTATTCATGCATCCAGTGGTGATCCTTGACATGCAAGGATTGCTCAGCAAATATAAAGAATCACAGTGCTGTAAACGTGATAATATTGATGCACCAACTCGTTAAAATATCTTTTTGGTCTCTTTATTTTGAATCTAAATGCTCCTTGTCAGGTCCAAACAGCATTTCTCCATTAATCACTGACAAGATTGTGTTAAATACATTTCCCTGCAGATTTGGGTCGCATGACTTTCCTCCTTTTAGCTAACTGTAAAGAAAGATGTTTGGCACTTACTGTGCAAGCTGAGATTTTGGTTGATTGTAGTGTAATGAATCAGTATTTATATTTCTGCCCAGGTGTTTTACATGCAGTAATGTGAGAAGGTGctctaacaaaaacaaaccatcAGTATGTAAAGAGGAAATCCTCATCATTCCTTGATATGTatttgatttgtgtgtgtgagtatgtgtgtgtgttccgagattttttttttttatagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83741 lncRNA upstream 27643 18365280 ~ 18388485 (+) True G62533
TU83694 lncRNA upstream 94970 18320643 ~ 18321158 (+) True G62508
TU83688 lncRNA upstream 101351 18313211 ~ 18314777 (+) True G62502
TU83666 lncRNA upstream 119225 18293260 ~ 18296903 (+) False G62484
TU83734 lncRNA downstream 21772 18441362 ~ 18474731 (+) False tpcn1
TU83749 lncRNA downstream 37908 18457498 ~ 18459249 (+) True G62540
TU83769 lncRNA downstream 78373 18497963 ~ 18498301 (+) True G62557
TU83771 lncRNA downstream 79040 18498630 ~ 18498972 (+) True G62558
TU83739 lncRNA downstream 80288 18499878 ~ 18500121 (+) True G62532
XM_039803605.1 mRNA upstream 15387 18389111 ~ 18400741 (+) True si:ch211-204d2.4
XM_039803606.1 mRNA upstream 15387 18389111 ~ 18400741 (+) False si:ch211-204d2.4
XM_039803607.1 mRNA upstream 15387 18389111 ~ 18400741 (+) False si:ch211-204d2.4
XM_039803608.1 mRNA upstream 15387 18389111 ~ 18400741 (+) False si:ch211-204d2.4
XM_039803604.1 mRNA upstream 29875 18382952 ~ 18386253 (+) False si:ch211-113d22.2
XM_039802175.1 mRNA downstream 13227 18432817 ~ 18437190 (+) True cfap73
XM_039802176.1 mRNA downstream 13227 18432817 ~ 18437190 (+) False cfap73
XM_039803228.1 mRNA downstream 21757 18441347 ~ 18455076 (+) True tpcn1
XM_039802331.1 mRNA downstream 155398 18574988 ~ 18587715 (+) True si:dkey-98f17.5
XM_039802345.1 mRNA downstream 218104 18637694 ~ 18642437 (+) True p2rx2
TU83742 other upstream 122 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 84898 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 406810 17998686 ~ 18009318 (+) False cmya5
TU83072 other upstream 1881979 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1940223 16468367 ~ 16475905 (+) False LOC120560890
XR_005639481.1 other downstream 241567 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 1015317 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 2058222 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 2058222 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 2256827 20676417 ~ 20677916 (+) True G63480

Expression Profile