RNA id: TU83772


Basic Information

Item Value
RNA id TU83772
length 382
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G62559
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18500125 ~ 18500506 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGGGATCTAACCTGGTTCTGGTTTGGCtgccacaaacacccccacaggTGCCCACTCCAAATACagtgggatgtggtggaactaCGGTTTTCGGAGATACAGTCAGTACAGTAAACGCGTTTAAAGTGCCTGAAACATATGCTGCATGTGCAGGTTTTGCTGGTATGAAGCTATACACACCTTGCTGTAGGCCAGCCGAGTGAATGCTCGTTTCGCCTCCGTTGGCTCTAGGAACTCGATAATGGCGGTGAGGCCTGAGGGCGGCAGCAGTACTCGGCCCAAAGAGCCATGAGGTGAGAAAAGCTCCTCTAACTCTGATGCCGTCACTTCAGCTGGAAGGTTTTTCACCAGGACGACAGTTGTACTCCTCGCTGCTGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83739 lncRNA upstream 4 18499878 ~ 18500121 (+) True G62532
TU83771 lncRNA upstream 1153 18498630 ~ 18498972 (+) True G62558
TU83769 lncRNA upstream 1824 18497963 ~ 18498301 (+) True G62557
TU83734 lncRNA upstream 25394 18441362 ~ 18474731 (+) False tpcn1
TU83749 lncRNA upstream 40876 18457498 ~ 18459249 (+) True G62540
TU83773 lncRNA downstream 1256 18501762 ~ 18502375 (+) True G62560
TU83839 lncRNA downstream 30504 18531010 ~ 18531311 (+) True G62613
TU83895 lncRNA downstream 116568 18617074 ~ 18617569 (+) True G62656
TU83911 lncRNA downstream 136220 18636726 ~ 18637221 (+) True G62667
TU83952 lncRNA downstream 237048 18737554 ~ 18742398 (+) False mvk
XM_039803228.1 mRNA upstream 45049 18441347 ~ 18455076 (+) True tpcn1
XM_039802175.1 mRNA upstream 62935 18432817 ~ 18437190 (+) True cfap73
XM_039802176.1 mRNA upstream 62935 18432817 ~ 18437190 (+) False cfap73
XM_039804356.1 mRNA upstream 80911 18407348 ~ 18419214 (+) True tbx5b
XM_039803608.1 mRNA upstream 99384 18389111 ~ 18400741 (+) False si:ch211-204d2.4
XM_039802331.1 mRNA downstream 74482 18574988 ~ 18587715 (+) True si:dkey-98f17.5
XM_039802345.1 mRNA downstream 137188 18637694 ~ 18642437 (+) True p2rx2
XM_039802880.1 mRNA downstream 160651 18661157 ~ 18685463 (+) True acacb
XM_039802881.1 mRNA downstream 160651 18661157 ~ 18685463 (+) False acacb
XM_039802879.1 mRNA downstream 160651 18661157 ~ 18685463 (+) False acacb
TU83744 other upstream 80535 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 84119 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 168895 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 490807 17998686 ~ 18009318 (+) False cmya5
TU83072 other upstream 1965976 16533329 ~ 16534149 (+) False LOC120560897
XR_005639481.1 other downstream 160651 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 934401 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1977306 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1977306 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 2175911 20676417 ~ 20677916 (+) True G63480

Expression Profile