RNA id: TU83781



Basic Information


Item Value
RNA id TU83781
length 290
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G62567
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18329603 ~ 18329892 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cctctatggaaATTTAACATaagggtgtactcacttttgttgccagcggtttagacattaatggctgtgtgttgagttattttgaggggactgcacatttacactgttatacaagctgtacacttaatactttacattgtagcagtGTAATtccttcagtgttgtcccattaaaagatataattttAACTtaacttttgtgagatactgtattaaTATCCTCATGTTGTCTGATGAGGATCTGTTCTTCATGAAGCCTGTTTGGTTGGAATGTATAATATTGGGTAAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83677 lncRNA downstream 25247 18304157 ~ 18304356 (-) True G62493
TU83626 lncRNA downstream 93917 18234605 ~ 18235686 (-) True G62452
TU83570 lncRNA downstream 273460 18055251 ~ 18056143 (-) True G62399
TU83567 lncRNA downstream 273752 18055251 ~ 18055851 (-) False G62399
TU83475 lncRNA downstream 396135 17931742 ~ 17933468 (-) True G62339
TU83782 lncRNA upstream 1492 18331384 ~ 18332396 (-) True G62568
TU83785 lncRNA upstream 25350 18355242 ~ 18357753 (-) True G62571
TU83803 lncRNA upstream 64944 18394836 ~ 18397946 (-) True G62586
TU83856 lncRNA upstream 191672 18521564 ~ 18521875 (-) True G62629
TU83857 lncRNA upstream 205041 18534933 ~ 18535281 (-) True G62630
XM_039803093.1 mRNA downstream 2685 18321554 ~ 18326918 (-) False tfip11
XM_039803091.1 mRNA downstream 2685 18321554 ~ 18326918 (-) True tfip11
XM_039803090.1 mRNA downstream 8454 18313375 ~ 18321149 (-) True thoc5
XM_039803087.1 mRNA downstream 25746 18297593 ~ 18303857 (-) False fancg
XM_039803086.1 mRNA downstream 25748 18297593 ~ 18303855 (-) True fancg
XM_039803097.1 mRNA upstream 3202 18333094 ~ 18344523 (-) False si:ch211-166a6.5
XM_039803096.1 mRNA upstream 3202 18333094 ~ 18344523 (-) True si:ch211-166a6.5
XM_039803233.1 mRNA upstream 107784 18437676 ~ 18443018 (-) True iqcd
XM_039803232.1 mRNA upstream 107784 18437676 ~ 18441111 (-) False iqcd
XM_039803231.1 mRNA upstream 125335 18455227 ~ 18462329 (-) False slc8b1
XR_005639489.1 other downstream 25741 18298901 ~ 18303862 (-) False fancg
TU83669 other downstream 32925 18293256 ~ 18296678 (-) False LOC120560503
unassigned_transcript_262 other downstream 369719 17959813 ~ 17959884 (-) True trnaq-cug_5
XR_005639516.1 other downstream 433706 17859355 ~ 17895897 (-) False pip5k1bb
XR_005639574.1 other downstream 724483 17598088 ~ 17605120 (-) True LOC120561236
TU83796 other upstream 47710 18377602 ~ 18380502 (-) True G62580
TU83799 other upstream 53113 18383005 ~ 18386269 (-) True G62582
TU83818 other upstream 110017 18439909 ~ 18442825 (-) False iqcd
TU83834 other upstream 159980 18489872 ~ 18492390 (-) False zgc:158398
TU83852 other upstream 180263 18510155 ~ 18512261 (-) True G62626

Expression Profile