RNA id: TU83782



Basic Information


Item Value
RNA id TU83782
length 1013
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G62568
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18331384 ~ 18332396 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCATTTTAATGGAACAGTGATGTCACATTGTCCTGGAATACAcctgtacatttacatttttattgaatTCTTAATAGAGTATATAAGTACAGGGTTGGTCATACATTTCGCAATCTTGGCATAAACATACGACATGTCACagaggaaaaataaaacttgaaaaataaaGTAAGAAATATAAGGGGGAAATCCAGTCTACAGAAGGATGAAGAAGCTATGCTGTATTTAGTCTCTGCTTTCTGAGGTTGAGTTTTCATTAGCCCTTGTGTAGGCCAAAAAAGATCCCAAGAGGTCATCCCATCCTCCTTGTTAGCCAACAGTTTGTGAAGCATAGAATGCTGTCACCACCATTGCATTAGTCCAGTCTTTCAGATTAGGAGATACAGCAGTTTTCCAGTGTCTTAAAATAACTCCAGAAGCTGTGACCAAGCCCaccaaaatgacagaaaaagttatttttgaTAATATTCAGTATTTGTGATCTGTCCCCTAGTAAACATACAGCAGGAGTCAGGGGAATCACTGAACCTGACCAGTTACTCAGGAAGTCCACAACTTTGACCCAAAATTGACACACTAATGCACATTTCCATACACAGTGAAGAAAAGTTCCTACCTCTGTTTTACACTTCCAACCCATATTATCATACATCAATTTCATTCTATGTAATCTCACAGGGGTATGATAATATCTAAGCATGATCTTATATTGTGTGAACTTCCCTCTTGCTTCCCTTACATACTTTCCACAGTCTGCTAGAACCCCCAACCATTTCTCCTGTGTAAAGTTTAATCTCAGGTCTCTCTGCCATAACAATTTCACATTAGAGGACTCACCACTTACTGAATAGTTTTTTCGTCTATAAAATTGTGAGGCCGTGCAGCGTTCCTGTGGCGCATTCAGatattacaaaatataattttcaGAACCATTACCAATTCGGGATTTTACACAGTCCCTGATTTGTaagtatttccaaaaatgttgttTGCCTTTGAGTTTAAATTGAAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83781 lncRNA downstream 1492 18329603 ~ 18329892 (-) True G62567
TU83677 lncRNA downstream 27028 18304157 ~ 18304356 (-) True G62493
TU83626 lncRNA downstream 95698 18234605 ~ 18235686 (-) True G62452
TU83570 lncRNA downstream 275241 18055251 ~ 18056143 (-) True G62399
TU83567 lncRNA downstream 275533 18055251 ~ 18055851 (-) False G62399
TU83785 lncRNA upstream 22846 18355242 ~ 18357753 (-) True G62571
TU83803 lncRNA upstream 62440 18394836 ~ 18397946 (-) True G62586
TU83856 lncRNA upstream 189168 18521564 ~ 18521875 (-) True G62629
TU83857 lncRNA upstream 202537 18534933 ~ 18535281 (-) True G62630
TU83851 lncRNA upstream 206730 18539126 ~ 18540015 (-) True G62625
XM_039803093.1 mRNA downstream 4466 18321554 ~ 18326918 (-) False tfip11
XM_039803091.1 mRNA downstream 4466 18321554 ~ 18326918 (-) True tfip11
XM_039803090.1 mRNA downstream 10235 18313375 ~ 18321149 (-) True thoc5
XM_039803087.1 mRNA downstream 27527 18297593 ~ 18303857 (-) False fancg
XM_039803097.1 mRNA upstream 698 18333094 ~ 18344523 (-) False si:ch211-166a6.5
XM_039803096.1 mRNA upstream 698 18333094 ~ 18344523 (-) True si:ch211-166a6.5
XM_039803233.1 mRNA upstream 105280 18437676 ~ 18443018 (-) True iqcd
XM_039803232.1 mRNA upstream 105280 18437676 ~ 18441111 (-) False iqcd
XM_039803231.1 mRNA upstream 122831 18455227 ~ 18462329 (-) False slc8b1
XR_005639489.1 other downstream 27522 18298901 ~ 18303862 (-) False fancg
TU83669 other downstream 34706 18293256 ~ 18296678 (-) False LOC120560503
unassigned_transcript_262 other downstream 371500 17959813 ~ 17959884 (-) True trnaq-cug_5
XR_005639516.1 other downstream 435487 17859355 ~ 17895897 (-) False pip5k1bb
XR_005639574.1 other downstream 726264 17598088 ~ 17605120 (-) True LOC120561236
TU83796 other upstream 45206 18377602 ~ 18380502 (-) True G62580
TU83799 other upstream 50609 18383005 ~ 18386269 (-) True G62582
TU83818 other upstream 107513 18439909 ~ 18442825 (-) False iqcd
TU83834 other upstream 157476 18489872 ~ 18492390 (-) False zgc:158398
TU83852 other upstream 177759 18510155 ~ 18512261 (-) True G62626

Expression Profile