RNA id: TU83796


Basic Information

Item Value
RNA id TU83796
length 1529
RNA type TUCP
GC content 0.42
exon number 6
gene id G62580
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18377602 ~ 18380502 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCTGCTGCAGAGCTTGTTCTAGAGACTCGTTCTTCATCTGCTCCTTCCTCAAACTGGCGGCCATTGCCATGTTCTCGGAGCTCAACTTTGCACGCACCTGAGCGATCTCCTCATTGGCCTTGTCTAGTTTCTCCTCAGCATGGAGTTTAAGTGTCTGGTATCTCTGCTCCTCCTGCTTGACTCTGGCCAGATACTCCTGAGCACACTTCTTCAGCACCTCCTCATTTTTCTTAAAGCCTTCCAGGGTGCTCTTCAAATTTTCATAACGCCGAAACACGTCGGAGAGAGATCGCTCCACGGAGTTCAGGTCAGCCAGGGCGGCTTCCTTCTCCGTCGTCACAGTCTGCAAAGCCTTCTGGGAACTCTGGTTGCTGCGCCGCTTGTCCTCGATCATCTGAGCGATTGTCTTCTCATATTCTGCAACAATCTTCTTGTTGTCTGCTGTCCTCGTACTTCTTCTTCCAGTCGTTGGCTTCCGTCTCTTTAGTGATGATCTCCTCTCTAATGAGGGTAAGAACGGCCTGTTTTTCTGCCTCACTGATACAGATGGAATCCAGGACCTGACTTCCTGTTTTCTGCATTTCACTTCCCTCCGACTTGTTCTTCAGCTTGCATGGGTCCTCAAACTGCTGAAGGTAGAAGGAAATCAGTTTTCTTGTAAATCCAGTAGTATAATGGTGGGTGAGTCTACCTAAACTTTTCAAGAATGTACATATGTAAGGTATTTATGACAAAAACACAAGTAACAATCACCAATACTGCCATACATTTACactaaaacaaacacttttcccCCAGTTTTTCTCatcatttgtttgttgtttaataCTGTGTCTTCTAATAATGTTCTTTCACAAGTATAGAATGCATAATTTTCTGTGCAGcaaatttttcttcttctgggaAATGGAAAACCCATTATAATGTAGGTGCCTGGATAGCAAATCAAAACCCTTCATGTTATTTGTTACAAAATACCAATTAGTGAGAGAAAGTAACAAAGGAACATTTCATTTTGTCATAAACTGCATATTATGATTCTCTCTCTTATCCTTTTTTCTTCATTCTCACAAACTTCTCTCATTCTTATTTTTTACCCTGTACCCCTCTTGCCTTTCAATCAGAGTTCTAACACATCTCaatccttcttcttctcctccctgtctctctcccctttcattttgTCCTTCCATGGATTATGACAGTCATATTCTAATCTCCTGAATGTAATCTAAATCCATCTGTCACCTGAGTACATGAACATGGTGGCAGACACTAAGTTCCTCCTGCTCTCCTACAGCATAGTGCAGTCATCTTATCAAACAAACGATCATACATAATGCAGCTTTAGAAAAAAATCACGCAGGTAGCTCTAAACACAAAAACTGGGCACTCTATTACATCTTTAAGTCACATCACACTTTACTTGAGTCCTTTGCAATTCAAATCAGAAAAGAAGTGCTAAACACAATGTGCCAATATGACCATTACAGTGACCAGTGAAATGTAATGCTGGGACACGTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83785 lncRNA downstream 19849 18355242 ~ 18357753 (-) True G62571
TU83782 lncRNA downstream 45206 18331384 ~ 18332396 (-) True G62568
TU83781 lncRNA downstream 47710 18329603 ~ 18329892 (-) True G62567
TU83677 lncRNA downstream 73246 18304157 ~ 18304356 (-) True G62493
TU83626 lncRNA downstream 141916 18234605 ~ 18235686 (-) True G62452
TU83803 lncRNA upstream 14334 18394836 ~ 18397946 (-) True G62586
TU83856 lncRNA upstream 141062 18521564 ~ 18521875 (-) True G62629
TU83857 lncRNA upstream 154431 18534933 ~ 18535281 (-) True G62630
TU83851 lncRNA upstream 158624 18539126 ~ 18540015 (-) True G62625
TU83955 lncRNA upstream 354406 18734908 ~ 18737388 (-) True mmab
XM_039803097.1 mRNA downstream 33079 18333094 ~ 18344523 (-) False si:ch211-166a6.5
XM_039803096.1 mRNA downstream 33079 18333094 ~ 18344523 (-) True si:ch211-166a6.5
XM_039803093.1 mRNA downstream 50684 18321554 ~ 18326918 (-) False tfip11
XM_039803091.1 mRNA downstream 50684 18321554 ~ 18326918 (-) True tfip11
XM_039803090.1 mRNA downstream 56453 18313375 ~ 18321149 (-) True thoc5
XM_039803233.1 mRNA upstream 57174 18437676 ~ 18443018 (-) True iqcd
XM_039803232.1 mRNA upstream 57174 18437676 ~ 18441111 (-) False iqcd
XM_039803231.1 mRNA upstream 74725 18455227 ~ 18462329 (-) False slc8b1
XM_039803229.1 mRNA upstream 74725 18455227 ~ 18462329 (-) True slc8b1
XM_039802317.1 mRNA upstream 82701 18463203 ~ 18467837 (-) True LOC120560133
XR_005639489.1 other downstream 73740 18298901 ~ 18303862 (-) False fancg
TU83669 other downstream 80924 18293256 ~ 18296678 (-) False LOC120560503
unassigned_transcript_262 other downstream 417718 17959813 ~ 17959884 (-) True trnaq-cug_5
XR_005639516.1 other downstream 481705 17859355 ~ 17895897 (-) False pip5k1bb
XR_005639576.1 other downstream 772482 17598088 ~ 17605120 (-) False LOC120561236
TU83799 other upstream 2503 18383005 ~ 18386269 (-) True G62582
TU83818 other upstream 59407 18439909 ~ 18442825 (-) False iqcd
TU83834 other upstream 109370 18489872 ~ 18492390 (-) False zgc:158398
TU83852 other upstream 129653 18510155 ~ 18512261 (-) True G62626
unassigned_transcript_263 other upstream 572398 18952900 ~ 18952972 (-) True trnak-uuu_12

Expression Profile