RNA id: XM_039803233.1


Basic Information

Item Value
RNA id XM_039803233.1
length 1688
RNA type mRNA
GC content 0.45
exon number 5
gene id iqcd
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18437676 ~ 18443018 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCAGGGAGGGGCTGAGGGGTGTACTGGTCTGCTGAGGCAGCAGTTTCTCAGATGGGTCATTTTGTAGCTTATATGTGAGGAATACAAAGGCAGCAGGATTACTATGTTGAGTGGATGCATGGATACCCATACGTtctgtacgtacacacacaacacacacacacacacacacacacacacacacacacacacacacacacacacaggtggacaATCTCTGCTCTCCATTAAAGCAGTGTGGCCTGGACGTGCAGCATGTATGCAGCCTGTCAACAACATTAAATGAATTCAGACTGCGCTACTGCACATCTGTATGTCTATAAAGGGAGCAATGGTGCTGGCGAAGACAAAGACCCAATCAGAAGATGCTCTAAAGAACAAAGACATGTCACAGAAGAAGCTGCTCTCTCTTGAGGCTCAACGCATCTCAAGCATATTGGAAAACTGCATTAGTCAAGTTGAGTTTGCAGCCGCTCTGCCTACTGTCCTCCCGTTTAACAGTGTGTCCAGTGTTGTGGACAAGGAGTTGAGCAGGGCACTTCAAGACCATCAAATATTAGATAAAAGTCTGGAGGGGCTAATAGGTCTCAAGCAGTCAGATGAGGAGCAAGGAGGAGAATTTGGAAAAGCAAGGGCTCAACTTGAGAAGGACATCAAGAACTCTGTCAGGGATCTACTCAGGCTTGTCCGAGCCCATCCAGATGCCCTTTGTGTTTTGAGGACAGAGCTAGGTATGGAATTAGGGGAGAGCGAGTACATGCTAATTCGAGGACTTAAGAAGTTCCACAGCCACGTGGTAGAACAGTTGCTGACTAGTCCGGATGAGGAGCTGGAGCTGCTTCTCCACAAGCAGGTGTCTTCATCCCCTGCCCAAGATTCGGAGCACCTGGTTTTATTGGAAGAAGAAGTAGCTACAAGCATGAAGCAAATAGATGCGATGatttctGAGAAAAATGTTGAGATCCAAAATTTGCAGAGTGGTTTGAATGGGAACATCAGACAAGACGCAGGTGTGTCCCTTCTCGTCGAGAAGCAGTGCCAGTCACATATCAAGGCAGCAAAGATAAAGCACACCAGTATACAGCGGGAGATTGATCGACTGAACAGTCAGCTCAACAATTTGATCCTTGaaaacaggcaggcagagagagtaATCCAAACGAAAAATGAAAAGGTGGAGGCAGAAATTGAATACTTGCTCCAAACTTTTGACGATGTAATAGGAGAAAACCAGGCCGACCTGGAgttaaataaaatggattatgaaatggaagaggaggagctgaTGAAGCTGAAGTCATCCTTTTCTACCCTAGAGGTTGAGTGCAACCAGATCCAGGAGAAGCGTCGACTTGCAGATGAGAAGAGAAAGGAGGATATGAGGGAGCTGGAGTTGAAGACCAAAGCTGCTATTTTTGCCCAAGCCTGGTGGAGAGGCTACAGTACTCGCAAGGCCTTGAAGAACAAGGGCAAGAGCAAGAAGGCCAAAAAAGGCAAAGGCAAGAAGACCAAATAAACAACCACTGACTAGTTTCATCACTCTGgtacaacaacacaaactgtaGAGCATGAATGTTTttggatgtttaaaaaaaaaagagagactgtTGAGCAAATACTGTTATACTCCATAtcccgtgtgtgtttgtcatttaTGTGCTGTTCTCAATAAAGTTCTTTATGTTA

Function

GO: NA

KEGG:

id description
K24839 IQCD, DRC10; IQ domain-containing protein D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83803 lncRNA downstream 39730 18394836 ~ 18397946 (-) True G62586
TU83785 lncRNA downstream 79923 18355242 ~ 18357753 (-) True G62571
TU83782 lncRNA downstream 105280 18331384 ~ 18332396 (-) True G62568
TU83781 lncRNA downstream 107784 18329603 ~ 18329892 (-) True G62567
TU83677 lncRNA downstream 133320 18304157 ~ 18304356 (-) True G62493
TU83856 lncRNA upstream 78546 18521564 ~ 18521875 (-) True G62629
TU83857 lncRNA upstream 91915 18534933 ~ 18535281 (-) True G62630
TU83851 lncRNA upstream 96108 18539126 ~ 18540015 (-) True G62625
TU83955 lncRNA upstream 291890 18734908 ~ 18737388 (-) True mmab
TU83997 lncRNA upstream 304175 18747193 ~ 18748609 (-) True G62733
XM_039803097.1 mRNA downstream 93153 18333094 ~ 18344523 (-) False si:ch211-166a6.5
XM_039803096.1 mRNA downstream 93153 18333094 ~ 18344523 (-) True si:ch211-166a6.5
XM_039803093.1 mRNA downstream 110758 18321554 ~ 18326918 (-) False tfip11
XM_039803091.1 mRNA downstream 110758 18321554 ~ 18326918 (-) True tfip11
XM_039803090.1 mRNA downstream 116527 18313375 ~ 18321149 (-) True thoc5
XM_039803231.1 mRNA upstream 12209 18455227 ~ 18462329 (-) False slc8b1
XM_039803229.1 mRNA upstream 12209 18455227 ~ 18462329 (-) True slc8b1
XM_039802317.1 mRNA upstream 20185 18463203 ~ 18467837 (-) True LOC120560133
XM_039802319.1 mRNA upstream 20336 18463354 ~ 18469696 (-) False LOC120560133
XM_039802318.1 mRNA upstream 20336 18463354 ~ 18469633 (-) False LOC120560133
TU83799 other downstream 51407 18383005 ~ 18386269 (-) True G62582
TU83796 other downstream 57174 18377602 ~ 18380502 (-) True G62580
XR_005639489.1 other downstream 133814 18298901 ~ 18303862 (-) False fancg
TU83669 other downstream 140998 18293256 ~ 18296678 (-) False LOC120560503
unassigned_transcript_262 other downstream 477792 17959813 ~ 17959884 (-) True trnaq-cug_5
TU83834 other upstream 46854 18489872 ~ 18492390 (-) False zgc:158398
TU83852 other upstream 67137 18510155 ~ 18512261 (-) True G62626
unassigned_transcript_263 other upstream 509882 18952900 ~ 18952972 (-) True trnak-uuu_12
unassigned_transcript_264 other upstream 510472 18953490 ~ 18953562 (-) True trnak-uuu_13
TU84214 other upstream 658223 19101241 ~ 19102450 (-) False ficd

Expression Profile