RNA id: XM_039802321.1


Basic Information

Item Value
RNA id XM_039802321.1
length 2896
RNA type mRNA
GC content 0.41
exon number 7
gene id zgc:158398
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18488162 ~ 18492407 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATATCTATGAATGCACCGATCGCTGTCGtgctcatggatgtattaagagaacactCTCGTGATGCTACCGTTGTTGCGCTTTAATGTAACTTTAAACATCTTAAATGTCGAACCCCGGTTCGCTTAACGTCAAGAAACTCTGTCATTTACCAAAACTGGCGACGTGATCAGAAAAGACTGCTCAAATTCAAGCTTGGCCCAGGTGTATGTGGAGCTGGATGATGGGTTTCTGGCAGCCGGTAACCAACCTTAGAGATTATGTATCCCAAAATCCTCCAGGGGTTACATTCTTCCTGTGTCTGTTGACTTTGGCTATCTCATTTATCTGCCTCAGCTCTTATAGCTACACTCACACTCTGCCTAACCCTGACACAGCAAAGGACTGGAACCATCTGCTGGCCTCCTTATCTAAGTTCCAGCTGTGTGTGAAAGCCAATGCAAGTACATCTGAGCTTGTCTCACCAGTCCCCTCTCCTCTGATAGATAGAAACATTTCAGTTGACTCTACAAAGACTCCTTCTCTCACCATATTGCATCTCAAGGTTCCTCTGGCTGTGACTACCCACTCAAACAGTGGCTCTCTAAAATACCTTGGTTTGCAGACTGCCTTGAGAGCCAGTCAATTACATCTTGGAGGCAATGAAATTGTTAATGTGACTCTAGAGGTTTTGTCTGGAAATGATACCTACACCTGCCTCACCATTAATGCCCAAACACACCTCCTGCCCATGAGCCTACTTCCGCCAGAGTGCCCTGCATCTGAGAACAACATTTCACCCATCCATGTGGAAGCGAGCAACCAGCTGCCTACAGCATCACAAACCTGCTACAGTCTACGCTCCAAGAACGATCCTACACTCACAGTCATGTTAACACCGGTGGAGCAGAGCGTGGCGGTGCGACATCTGTTGgaagtcagtgtgtgtctgctaGGAGTTTGTTTGTTACTCTGTGTAGCTGCTAGTCTGACACATCCAACCCTACGCCGCTACCATTGGAATGGACTGGATCTACAAAATGAGCCCTTGATAGACCCCTGAACATTTTTCATCTGCTGCATCCTCAACAAATCAGTTGGTGTTGGAGAGAGAAGAGCGATATGTGTCACTACTTTTTAAAGGGGTATCCCACCAATTTGACAAAAGAAATCGTTTTTCATGTCTTCTTTTGGCAAGACCTCCAGGCTCCCATATTTTTGGATTAATCAATAATAGTTAAGTTGTGAATAAACTTTAATTTATCAAATGTCTGTAGCGGAGCGCTTCCTGGACTCAAAAAGTTAGCTtgaggtgctctttggatgggaTAATCATAATGTGGAAACTCCAAGGCACTCTCTTTTAGAAAAATACTAAGCCTTTATTTATGGCTTTGTCATCATAAATCTTAAAGTACTCCGACGCATTTCGGCATACAAGCCTTCGTCAGGGAGTCAAACTTTAATTTACTtctaactaaaaaaataaaatgtcataggGAGTTCTGAATAGTTTATGAAAACTGTTGTATAACGTCTTCAGTAGCACTGGAGGGAGCTTGTTAAAGAAATTAACCCTGGTAGTTATCTTTGCTTGGGATTGGAGACAAGATATTATGTAGCATCCAGCGAAGTGAAGATATTTAATCTTCTGCTGCATCAATTCTGAACATTTTTAATCCGCCTCTTCCAAGTTTCCCAACTTCATGAAAGTACAATACTTAACCAGTGGAGCATGCTTGTAATAGGGGACTGAAGTATTATATGATATCCAAGTGAGTAACTGGGTTGTGATAGAGAAGAGTATATTTGTTATGGGAACAACTTTTTAGCTGGTAATGCCTACACTGATGACTGGTAATACATTCACTGTACAGTCTCTTATATGCAGTGCATGCCATGTTTACTTCATTTCCCAGAATGACTCTCAATGACTTGTGGAAAATGGACAATAATGTGTTGCATTCACCAGAGTGAGATCAAAAAGCTAAatctaatatttttttaaattgggaaAGTAGTTTTTGTAATAATGTATTCCTATCagcagatgtttttttctttgtaaatgTTACTGGACCAAAGTTCTTTGGGTATTCTAGGCTAGTTTGTCTGTTTTAAACTCAAATGTACATATCTGACACTGAAAGCTCATTGCATCCAGATGCCAGATCTACAGTTCCACAAGTATTCTTGCATCTGCCTTCATTGTGTTCTATCtatagacaaaaacaaaaaaaaactggacgTAGCAGCAGTTACATcccccattggtttgtggagtaCCGTTTTAGCAAAGAGGTTATAATAGTAAGAGGCAACCTCTTATTATTGTAACACTTGGTTTTAGCCTGGAGTTGGGCTTTTGGCTGTTGCTATCTTGGTCTTTTGAAACTGGACGTGACCATATTTGGCCAAGAGGAtcgagctggggaggatgataCAGCTAGGCCAGTGTCTTTTGGCAGCgttttaaggcacttccgcattggctACAGTTATTTAGACCCGGAAGCTACGTCcagtatttagtatttttttacagtctacgGTTATATTTCTTGCAGAGTAGTAGAAACTTTAAAAAGGGAATGTTGAAGAAACACCCAAAGGTCTCCTTCTAACGTCTAttgttaaaatgagaaaaagaaaagggatgTAACATCTGCTGCTATGATAAAGATGTTTGTAATAGTTTAATAACGAGTTAACAggacactaaacacaaagtgtgTGCATCAAAATTATCAGTGTTAAGAACTGCCGTCTTTCAGACTCTGAGTAAATGAGTTTCCAGGAGCTCAGAAACCGATGACTGCGGTCAAGAAGGCATCCTGTTTTCAAACACTGTTTTCCTAGTTTTAGAAAGAATGAAACATTAATagtgaaaaatataaatactagGTTTCCAATGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83803 lncRNA downstream 90216 18394836 ~ 18397946 (-) True G62586
TU83785 lncRNA downstream 130409 18355242 ~ 18357753 (-) True G62571
TU83782 lncRNA downstream 155766 18331384 ~ 18332396 (-) True G62568
TU83781 lncRNA downstream 158270 18329603 ~ 18329892 (-) True G62567
TU83677 lncRNA downstream 183806 18304157 ~ 18304356 (-) True G62493
TU83856 lncRNA upstream 29157 18521564 ~ 18521875 (-) True G62629
TU83857 lncRNA upstream 42526 18534933 ~ 18535281 (-) True G62630
TU83851 lncRNA upstream 46719 18539126 ~ 18540015 (-) True G62625
TU83955 lncRNA upstream 242501 18734908 ~ 18737388 (-) True mmab
TU83997 lncRNA upstream 254786 18747193 ~ 18748609 (-) True G62733
XM_039802316.1 mRNA downstream 782 18470155 ~ 18487380 (-) False morc2
XM_039802315.1 mRNA downstream 782 18470155 ~ 18487380 (-) True morc2
XM_039802319.1 mRNA downstream 18466 18463354 ~ 18469696 (-) False LOC120560133
XM_039802318.1 mRNA downstream 18529 18463354 ~ 18469633 (-) False LOC120560133
XM_039802317.1 mRNA downstream 20325 18463203 ~ 18467837 (-) True LOC120560133
XM_039802320.1 mRNA upstream 335 18492742 ~ 18497861 (-) True plbd2
XM_039802322.1 mRNA upstream 5556 18497963 ~ 18504897 (-) True LOC120560136
XM_039802326.1 mRNA upstream 20102 18512509 ~ 18607135 (-) False LOC120560137
XM_039802333.1 mRNA upstream 44024 18536431 ~ 18558021 (-) True LOC120560142
XM_039802334.1 mRNA upstream 44024 18536431 ~ 18549211 (-) False LOC120560142
TU83818 other downstream 45337 18439909 ~ 18442825 (-) False iqcd
TU83799 other downstream 101893 18383005 ~ 18386269 (-) True G62582
TU83796 other downstream 107660 18377602 ~ 18380502 (-) True G62580
XR_005639489.1 other downstream 184300 18298901 ~ 18303862 (-) False fancg
TU83669 other downstream 191484 18293256 ~ 18296678 (-) False LOC120560503
TU83852 other upstream 17748 18510155 ~ 18512261 (-) True G62626
unassigned_transcript_263 other upstream 460493 18952900 ~ 18952972 (-) True trnak-uuu_12
unassigned_transcript_264 other upstream 461083 18953490 ~ 18953562 (-) True trnak-uuu_13
TU84214 other upstream 608834 19101241 ~ 19102450 (-) False ficd
TU84258 other upstream 687098 19179505 ~ 19200233 (-) True si:ch211-225b11.1

Expression Profile