RNA id: TU83852


Basic Information

Item Value
RNA id TU83852
length 1071
RNA type TUCP
GC content 0.44
exon number 6
gene id G62626
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18510155 ~ 18512261 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tagacggtccctgcGCAGCGCGCACTCTTCTCCCAAGCCGGCTGCttatatttcaattttatttgtccaGGTCTGAGGACGACTCGTTTTGATGAAAACCAGGTTCTAGCTCGTTGTCTACCTTACGGTAGGAAAGAGGCGTCGTTTGTGTTTTGATAAGTTATTGATGACGGAAGTTTTGTGACTCATTCCAACTCACCGGACATGATGGGTTTATGTATGGTGTTAAATGGAGCCGATTCTCCTCACCTCGCAGTCACTCTATATGTCTTGACAACAGATCACTTCTCCTCAGGATTTGTTGAGAGCAAAATCTATACATGAAGGATATACCTACTCTGTGATAAACTACAAACAATATTGGACTTTAAACAAAACATCGGCGACAAAATGCCAAAAGAATTTGCGGATGAATATCAACCTTTGCTTATAAAAGAAACCAAAGATAAAAAGCGACCCAAGTTTCCGAACAAATCACTTCTGCTGGCTGCGTGTGCTGCGTGTATAGGGGGAACCTTTCAGTGTGGATATAATATATCTATCATCAATGCTCCCACAACGCATGTGCAGAATTTCATCAACCAAACCTGGAGGGAGCGTTACCAAACTGACATATCAGCAGATGTTCTCACCCTGCTTTGGTCCACTATTGTGTCTATATTCACCATAGGAGGACTTCTAGGAGTGACAGTCGGTGGGACATTATCTGTGAAGCTGGGGAGGAAAGGGACGCTGTTGGCCAGTAATATATTTTCATTAATGGCTGCTCTGCTAATGGGTCTAAGTTACCCTACAGGATTATTTGAATTACTCATCATTGGACGTCTTCTTATTGGAATATATGCAGgCATTGGCCTTTGTATTCAACCTCAGTATTTGGGTGAAATAGCTCCAACTGCATTTCGTGGTGCCATGGGAATGGGAACTTCTATTTTCATCACTGTTGGGATCTTGACTGGACAAGTGATTGGCCTTAAAGAGCTCCTGGGTAAAGAAGAGCACTGGCCCATCCTGCTCTCCACCACATGTATCCcagcattgctgcagctcctgatCCTACCCTGGTTCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83803 lncRNA downstream 112209 18394836 ~ 18397946 (-) True G62586
TU83785 lncRNA downstream 152402 18355242 ~ 18357753 (-) True G62571
TU83782 lncRNA downstream 177759 18331384 ~ 18332396 (-) True G62568
TU83781 lncRNA downstream 180263 18329603 ~ 18329892 (-) True G62567
TU83677 lncRNA downstream 205799 18304157 ~ 18304356 (-) True G62493
TU83856 lncRNA upstream 9303 18521564 ~ 18521875 (-) True G62629
TU83857 lncRNA upstream 22672 18534933 ~ 18535281 (-) True G62630
TU83851 lncRNA upstream 26865 18539126 ~ 18540015 (-) True G62625
TU83955 lncRNA upstream 222647 18734908 ~ 18737388 (-) True mmab
TU83997 lncRNA upstream 234932 18747193 ~ 18748609 (-) True G62733
XM_039802322.1 mRNA downstream 5258 18497963 ~ 18504897 (-) True LOC120560136
XM_039802320.1 mRNA downstream 12294 18492742 ~ 18497861 (-) True plbd2
XM_039802321.1 mRNA downstream 17748 18488162 ~ 18492407 (-) True zgc:158398
XM_039802316.1 mRNA downstream 22775 18470155 ~ 18487380 (-) False morc2
XM_039802315.1 mRNA downstream 22775 18470155 ~ 18487380 (-) True morc2
XM_039802326.1 mRNA upstream 248 18512509 ~ 18607135 (-) False LOC120560137
XM_039802333.1 mRNA upstream 24170 18536431 ~ 18558021 (-) True LOC120560142
XM_039802334.1 mRNA upstream 24170 18536431 ~ 18549211 (-) False LOC120560142
XM_039802335.1 mRNA upstream 24170 18536431 ~ 18549108 (-) False LOC120560142
XM_039802328.1 mRNA upstream 37086 18549347 ~ 18554564 (-) True LOC120560138
TU83834 other downstream 17765 18489872 ~ 18492390 (-) False zgc:158398
TU83818 other downstream 67330 18439909 ~ 18442825 (-) False iqcd
TU83799 other downstream 123886 18383005 ~ 18386269 (-) True G62582
TU83796 other downstream 129653 18377602 ~ 18380502 (-) True G62580
XR_005639489.1 other downstream 206293 18298901 ~ 18303862 (-) False fancg
unassigned_transcript_263 other upstream 440639 18952900 ~ 18952972 (-) True trnak-uuu_12
unassigned_transcript_264 other upstream 441229 18953490 ~ 18953562 (-) True trnak-uuu_13
TU84214 other upstream 588980 19101241 ~ 19102450 (-) False ficd
TU84258 other upstream 667244 19179505 ~ 19200233 (-) True si:ch211-225b11.1
TU84427 other upstream 1037200 19549461 ~ 19554894 (-) False LOC120560442

Expression Profile