RNA id: TU83856



Basic Information


Item Value
RNA id TU83856
length 312
lncRNA type intronic
GC content 0.42
exon number 1
gene id G62629
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18521564 ~ 18521875 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CACCAATCGTATCTCAGTAGCCAAGCTAGAAGAGCTCTGGCAGCTGCAGTTCAAGCAGGACTTTCCTGATGCTGGACATTGACGACTCAGAGGTTAAAAAGGTAGTTCATGCGCATGTTATTCAGACGCAAGACCCCAAAGATGAAATGGAACAGTTGATGACCTACTACTCATCCTGGACAAAACTTAAACGCGCTGTGGCATGGTTTCTGAAACTTAAAGATTTGCTTAAGGAACTGAAAGCAAAGAGAAAGGAATCAAACTCACACGGAGAAAAACAGAATTAATCAGTTCAAGAAAGATTACAAAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83803 lncRNA downstream 123618 18394836 ~ 18397946 (-) True G62586
TU83785 lncRNA downstream 163811 18355242 ~ 18357753 (-) True G62571
TU83782 lncRNA downstream 189168 18331384 ~ 18332396 (-) True G62568
TU83781 lncRNA downstream 191672 18329603 ~ 18329892 (-) True G62567
TU83677 lncRNA downstream 217208 18304157 ~ 18304356 (-) True G62493
TU83857 lncRNA upstream 13058 18534933 ~ 18535281 (-) True G62630
TU83851 lncRNA upstream 17251 18539126 ~ 18540015 (-) True G62625
TU83955 lncRNA upstream 213033 18734908 ~ 18737388 (-) True mmab
TU83997 lncRNA upstream 225318 18747193 ~ 18748609 (-) True G62733
TU84039 lncRNA upstream 315099 18836974 ~ 18845777 (-) True G62771
XM_039802322.1 mRNA downstream 16667 18497963 ~ 18504897 (-) True LOC120560136
XM_039802320.1 mRNA downstream 23703 18492742 ~ 18497861 (-) True plbd2
XM_039802321.1 mRNA downstream 29157 18488162 ~ 18492407 (-) True zgc:158398
XM_039802316.1 mRNA downstream 34184 18470155 ~ 18487380 (-) False morc2
XM_039802315.1 mRNA downstream 34184 18470155 ~ 18487380 (-) True morc2
XM_039802333.1 mRNA upstream 14556 18536431 ~ 18558021 (-) True LOC120560142
XM_039802334.1 mRNA upstream 14556 18536431 ~ 18549211 (-) False LOC120560142
XM_039802335.1 mRNA upstream 14556 18536431 ~ 18549108 (-) False LOC120560142
XM_039802328.1 mRNA upstream 27472 18549347 ~ 18554564 (-) True LOC120560138
XM_039802329.1 mRNA upstream 42314 18564189 ~ 18572337 (-) False LOC120560140
TU83852 other downstream 9303 18510155 ~ 18512261 (-) True G62626
TU83834 other downstream 29174 18489872 ~ 18492390 (-) False zgc:158398
TU83818 other downstream 78739 18439909 ~ 18442825 (-) False iqcd
TU83799 other downstream 135295 18383005 ~ 18386269 (-) True G62582
TU83796 other downstream 141062 18377602 ~ 18380502 (-) True G62580
unassigned_transcript_263 other upstream 431025 18952900 ~ 18952972 (-) True trnak-uuu_12
unassigned_transcript_264 other upstream 431615 18953490 ~ 18953562 (-) True trnak-uuu_13
TU84214 other upstream 579366 19101241 ~ 19102450 (-) False ficd
TU84258 other upstream 657630 19179505 ~ 19200233 (-) True si:ch211-225b11.1
TU84427 other upstream 1027586 19549461 ~ 19554894 (-) False LOC120560442

Expression Profile