RNA id: TU83911


Basic Information

Item Value
RNA id TU83911
length 270
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G62667
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18636726 ~ 18637221 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCAGCTGTAACTTCTTGCGAGCTTTGTTTCTGGTGATGTAGTTGGTGGCAGAGCCCCTCTCATACTTTTTTCTTTTGAAGACCTCCCATTTACAAAGGATATGTGACCCTTTACACAAGTTTAGGTAAATGGAATTGTCAAAGAAGTAAGCTGTTAAGAAGCGAACACAACGCTCGCTACGATCAGCAGCAGATGCACGTGTCTTTGACATGCGCGGAGAAGGCGATGGAGGAGGACCCAGATGGTGGTCCTTCGTCCGCctgtataaa

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0030684 preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0008144 drug binding molecular_function
GO:1901265 nucleoside phosphate binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0097367 carbohydrate derivative binding molecular_function
GO:0017076 purine nucleotide binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0035639 purine ribonucleoside triphosphate binding molecular_function
GO:0030554 adenyl nucleotide binding molecular_function
GO:0043168 anion binding molecular_function
GO:0032553 ribonucleotide binding molecular_function
GO:0032555 purine ribonucleotide binding molecular_function
GO:0032559 adenyl ribonucleotide binding molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83895 lncRNA upstream 19157 18617074 ~ 18617569 (+) True G62656
TU83839 lncRNA upstream 105415 18531010 ~ 18531311 (+) True G62613
TU83773 lncRNA upstream 134351 18501762 ~ 18502375 (+) True G62560
TU83772 lncRNA upstream 136220 18500125 ~ 18500506 (+) True G62559
TU83739 lncRNA upstream 136605 18499878 ~ 18500121 (+) True G62532
TU83952 lncRNA downstream 100333 18737554 ~ 18742398 (+) False mvk
TU83993 lncRNA downstream 110269 18747490 ~ 18748496 (+) True G62732
TU83994 lncRNA downstream 110269 18747490 ~ 18748152 (+) False G62732
TU84005 lncRNA downstream 135534 18772755 ~ 18773108 (+) True G62741
TU84019 lncRNA downstream 227354 18864575 ~ 18864807 (+) True G62755
XM_039802331.1 mRNA upstream 49011 18574988 ~ 18587715 (+) True si:dkey-98f17.5
XM_039803228.1 mRNA upstream 181650 18441347 ~ 18455076 (+) True tpcn1
XM_039802175.1 mRNA upstream 199536 18432817 ~ 18437190 (+) True cfap73
XM_039802176.1 mRNA upstream 199536 18432817 ~ 18437190 (+) False cfap73
XM_039804356.1 mRNA upstream 217512 18407348 ~ 18419214 (+) True tbx5b
XM_039802345.1 mRNA downstream 473 18637694 ~ 18642437 (+) True p2rx2
XM_039802880.1 mRNA downstream 23936 18661157 ~ 18685463 (+) True acacb
XM_039802881.1 mRNA downstream 23936 18661157 ~ 18685463 (+) False acacb
XM_039802879.1 mRNA downstream 23936 18661157 ~ 18685463 (+) False acacb
XM_039802883.1 mRNA downstream 23936 18661157 ~ 18685463 (+) False acacb
TU83744 other upstream 217136 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 220720 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 305496 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 627408 17998686 ~ 18009318 (+) False cmya5
TU83072 other upstream 2102577 16533329 ~ 16534149 (+) False LOC120560897
XR_005639481.1 other downstream 23936 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 797686 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1840591 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1840591 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 2039196 20676417 ~ 20677916 (+) True G63480

Expression Profile