RNA id: TU83993


Basic Information

Item Value
RNA id TU83993
length 1007
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G62732
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18747490 ~ 18748496 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAAACTGACTCCTCCGTTGTCCAGGCTACTGTGCAGGACTTGAAGGACTGTGGCTTTGACTGCTGGGAAACAAGTATTGGCGGGCCGGGTGTCCAGCAgcactctcctctctctgttaaGGAGGAAGTTCTGGAGATTTTAAACCGTTACTGAGACTGTGGCTGAACAAGAGGACAGTTCTTTTGTTTACCTCAAGACCTGAAGGTATGTTCAACCAATGAAGTGAGCCGTGTGGAACAACTGAGTGGTGCTGGACAgagcttcctgtgttttcctgaCTGAAAAACAATCCAATCCTGTTGAAACTAACAACAATGCAACTGTATCTCTAACAAATTACTGATATTTATTTAGAACTGTGGGAAAATGGCTTATGGGTACAATTATATGTACTGAGAACTTTGTCCACTAGATGGCATCAGAGTTGCACAAATGCTTTTTATGAAACAGGATTTATGGTAAGAGGCTTtgataaattaattaatgtgtaaGTGAAGCACTGGCAGaattcatttatattttcatcCAAATGTTTAACGCAGAAGGGCCAACATATCTTAATGGATTAGATAACCGTCAGTCATTAATGCTCACTCTTGGCATTGTAACGTGTTGGTGGATAACCGCTTGAATAAAAGTGGTCGTTTTACAGAAAATGATGGCATAGTAAACGTTTGATAAATTAAATTGTGTTTTGGTTCTTTAACAAAACccaattactttttttcttctttttttttcttgagttTTCATAGTTTACAAAGAGGTTTATCAAAGTGACTGTGCTTTGATATTTCTCTGCATCATAAGCAGTGCTGGTGAAAccagaaaataataatgtcataaatatattctgagaACTATTTTGCACATAATGTAAAGCTTTCACACTCATACATTATTATAAAGACAGATGTTTGCAACTGCTTTGAATCAACATCCACCCTACAGTTTTTACTATGCTCTACTTGTAACGTAAAAGTgtttaaatgcaaaataatgCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83952 lncRNA upstream 5092 18737554 ~ 18742398 (+) False mvk
TU83911 lncRNA upstream 110269 18636726 ~ 18637221 (+) True G62667
TU83895 lncRNA upstream 129921 18617074 ~ 18617569 (+) True G62656
TU83839 lncRNA upstream 216179 18531010 ~ 18531311 (+) True G62613
TU83773 lncRNA upstream 245115 18501762 ~ 18502375 (+) True G62560
TU84005 lncRNA downstream 24259 18772755 ~ 18773108 (+) True G62741
TU84019 lncRNA downstream 116079 18864575 ~ 18864807 (+) True G62755
TU84099 lncRNA downstream 217587 18966083 ~ 18982623 (+) True G62796
TU84163 lncRNA downstream 332584 19081080 ~ 19081654 (+) False tmem119a
TU84161 lncRNA downstream 336438 19084934 ~ 19086862 (+) True G62836
XM_039803155.1 mRNA upstream 5091 18737518 ~ 18742399 (+) True mvk
XM_039802310.1 mRNA upstream 11015 18730216 ~ 18736475 (+) True aldh3b2
XM_039802311.1 mRNA upstream 11015 18731901 ~ 18736475 (+) False aldh3b2
XM_039802309.1 mRNA upstream 11015 18731902 ~ 18736475 (+) False aldh3b2
XM_039802312.1 mRNA upstream 11015 18732155 ~ 18736475 (+) False aldh3b2
XM_039803256.1 mRNA downstream 45754 18794250 ~ 18841202 (+) True fam222a
XM_039802370.1 mRNA downstream 123786 18872282 ~ 18878090 (+) True LOC120560157
XM_039802369.1 mRNA downstream 148127 18896623 ~ 18904773 (+) True ankrd13a
XM_039803869.1 mRNA downstream 175819 18924315 ~ 18952142 (+) True sgsm1a
XM_039803870.1 mRNA downstream 175819 18924315 ~ 18952142 (+) False sgsm1a
XR_005639481.1 other upstream 66329 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 327900 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 331484 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 416260 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 738172 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 686411 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1729316 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1729316 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1927921 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2840380 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile