RNA id: TU84019


Basic Information

Item Value
RNA id TU84019
length 233
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G62755
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18864575 ~ 18864807 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAGAATGTAAAATGACTTTGTACTTTGTAAGTGGATCACTGGAGGAAAGAGGAACTTCCTGCAGTCACACTGTATAATCAAGATCAGCATTCAGTTTATTGTACATCTCATAAATAGCATCAACAGTGGGAGTGAAGTTGATGAGAAATTTTCTGATTTTTTCCAAGCATTCCTCTTCCTTGATGTCCCGACCCTTGGAGAGGGCCTTCAAGAAATCCGTCTTATATGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84005 lncRNA upstream 91467 18772755 ~ 18773108 (+) True G62741
TU83993 lncRNA upstream 116079 18747490 ~ 18748496 (+) True G62732
TU83994 lncRNA upstream 116423 18747490 ~ 18748152 (+) False G62732
TU83952 lncRNA upstream 122177 18737554 ~ 18742398 (+) False mvk
TU83911 lncRNA upstream 227354 18636726 ~ 18637221 (+) True G62667
TU84099 lncRNA downstream 101276 18966083 ~ 18982623 (+) True G62796
TU84163 lncRNA downstream 216273 19081080 ~ 19081654 (+) False tmem119a
TU84161 lncRNA downstream 220127 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA downstream 221107 19085914 ~ 19086862 (+) False G62836
XR_005639511.1 lncRNA downstream 286726 19151533 ~ 19153584 (+) True LOC120560789
XM_039803256.1 mRNA upstream 23373 18794250 ~ 18841202 (+) True fam222a
XM_039803155.1 mRNA upstream 122176 18737518 ~ 18742399 (+) True mvk
XM_039802310.1 mRNA upstream 128100 18730216 ~ 18736475 (+) True aldh3b2
XM_039802370.1 mRNA downstream 7475 18872282 ~ 18878090 (+) True LOC120560157
XM_039802369.1 mRNA downstream 31816 18896623 ~ 18904773 (+) True ankrd13a
XM_039803869.1 mRNA downstream 59508 18924315 ~ 18952142 (+) True sgsm1a
XM_039803870.1 mRNA downstream 59508 18924315 ~ 18952142 (+) False sgsm1a
XM_039803871.1 mRNA downstream 59508 18924315 ~ 18948801 (+) False sgsm1a
XR_005639481.1 other upstream 183414 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 444985 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 448569 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 533345 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 855257 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 570100 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1613005 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1613005 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1811610 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2724069 21588876 ~ 21598799 (+) False LOC120560787