RNA id: TU84099


Basic Information

Item Value
RNA id TU84099
length 716
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G62796
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18966083 ~ 18982623 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTccatatataatttatttttttggcttaCCATTTCTGTTATTGTTTATTCTGGCCCCTCCTGAAAGCAAAACACAGACTTCTATCAGGCCTTTCTCATGGCAAACATTTTGACTTGATACAGCAGGAAAAGCACTGGAAAAGTGAACTAATAACTACTTCACTTTATTTACGGTAGATGAAACAGTGAGCCAGCATTTTCACTAAGAGGGCCCTGCacttaaattgtgtgtgtgtgtgtgtgtgtccaactGACACCTTCGTGCTGTATAAAAATATAGTCATATGCAGATAACATTCACTTTCCTATGCTCAATTGACTATGCCCGTAATCAGTTGCGGACAGCTCGGTTTACTTGTTGTAAACATGCAATTTTTTCAGATAAATCTGCAGGAGTCAACTTCCGCAATCTCTGGTGTCCTCATGGAGTCCTCGTCTGACACTTAATCTGTACCGAGGTCGCTGTGGGGTCTCACGCAGTCAGCAAGTTATTACTTTAAGTTTCATTAAAAAGGCCCTTTTAGGTTTTAACTAAATAAGTAAGACTGAACTGCAAACCAAGAGAACCACCAGAGACTACACTGAGCAAATTTAGAGACATTAATATACATCGACTTCTTGGAACCACTTTAATAGAACCAAcagttcaataaaaaaaaaaaataaaaaaaaaaaagaaacgacaagtaaaaacaaaaggaaaggcAGTAAGGCA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84019 lncRNA upstream 101276 18864575 ~ 18864807 (+) True G62755
TU84005 lncRNA upstream 192975 18772755 ~ 18773108 (+) True G62741
TU83993 lncRNA upstream 217587 18747490 ~ 18748496 (+) True G62732
TU83994 lncRNA upstream 217931 18747490 ~ 18748152 (+) False G62732
TU83952 lncRNA upstream 223685 18737554 ~ 18742398 (+) False mvk
TU84163 lncRNA downstream 98457 19081080 ~ 19081654 (+) False tmem119a
TU84161 lncRNA downstream 102311 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA downstream 103291 19085914 ~ 19086862 (+) False G62836
XR_005639511.1 lncRNA downstream 168910 19151533 ~ 19153584 (+) True LOC120560789
TU84387 lncRNA downstream 566787 19549410 ~ 19554906 (+) True G63005
XM_039803885.1 mRNA upstream 3275 18961837 ~ 18962808 (+) True LOC120560963
XM_039803883.1 mRNA upstream 4599 18953824 ~ 18961484 (+) True gatc
XM_039803884.1 mRNA upstream 7105 18958006 ~ 18958978 (+) True LOC120560962
XM_039803882.1 mRNA upstream 8742 18953825 ~ 18957341 (+) False gatc
XM_039803869.1 mRNA upstream 13941 18924315 ~ 18952142 (+) True sgsm1a
XM_039804001.1 mRNA downstream 2753 18985376 ~ 18992979 (+) True svopa
XM_039803653.1 mRNA downstream 19673 19002296 ~ 19022881 (+) False ssh1a
XM_039803654.1 mRNA downstream 19675 19002298 ~ 19022881 (+) False ssh1a
XM_039803655.1 mRNA downstream 25813 19008436 ~ 19022881 (+) True ssh1a
XM_039803656.1 mRNA downstream 25814 19008437 ~ 19022881 (+) False ssh1a
XR_005639481.1 other upstream 284922 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 546493 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 550077 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 634853 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 956765 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 452284 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1495189 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1495189 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1693794 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2606253 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile