RNA id: TU84161


Basic Information

Item Value
RNA id TU84161
length 1733
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G62836
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19084934 ~ 19086862 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttttgtttggttttttttatatatattggcTCACAATAAGTACAAAGTCTCATACAATACTCTGTATATTGCTTTTGTATGTGTACTTTAGCTGTCGACCTAAATGCATGTTCATACTGAATCCACCATGTGGGACCAGTGATTTTATACAATCAAGCCAAAtaccaaaatatatatacatacaagaAAAACACATCTCAACTTAGTATCCGACTTATGATCTCATTTGTGTTCTGTGTAGGAAAGCACTGCAAAGTAAGAACAATGTTGAGTTTTCCATATTTAGATTTAAGGATCGGACTTCATTCACTACATTCAACATGAACTTCCCACTCCAAAATCAGCATTTAATAACCAACTTCTGATCAACACTAATAGCACCTTCCATTTTAAAGAGAATGTTAAACAGTATAAAACTCCCAGAAGAGGGTGCAATACCTGACGTTGTATTAGTAAACAATCTTCCAAACAGCACTGCAGTAAAACCTTAAAGGGCTGGTACTGAGACATAATGGATAGTTAATAACAAGATATTAACTGGTGGCGTGTACACGCTCCTCCTTCTTGTCCTGTTGTTTTAATCTGTAGTCTGACAGCGCTGCCTTTATGGCATCTTCTGCAAGCACTGAAAGAAAAGGAGTGAGGTTTTCAGACAAGCTTTAAGCATGAAATTAAGCTTTGATTTTACCAAGAAATATACAGCCTGGGTCAGTTAACAAATTATTGGAAAACCTGCACTGAAGGTGTTCTTGTGGCTCATATACCAACACCTTGCTGAGACACTTTTTCCCCTTTAACTTGTCAtccatctttatttttattaagcTTTCAGGGTGTGCGTGATAATAACACTGACTTGTGTTAGAAAGCACATTACACTGCTTCTATTCTTTAATTGTATTACTTTAAACTTACTGGAGCAATGAAGCTTGACTGGAGGAAGGCAGAGTTCTTTGGCAATGTCTGTGTTCCTGATCTTCAGAGCTTCATCAACCTACCGGATGAAAACAGACTTCACCAAAAAAAGCAGGACTTGTAAAGCCATtgttctcttttccttttcattCGTATTAATAAACTCACCGACTTCCCCTTCACCCACTCTGTTGCTAGAGAGCTGGAGGCAATGGCTGATCCACAGCCAAATGTCTTAAACTTTGCTTCAATAATCTTGCCATTTTCGTCCACCTGGATCTGGAGACGATATATGATCAAACACCTAGCTAGTTGTACAATAGTTGGACTGAATTTGACCTCCCAACTTACCTGAAGCTTCATTACATCACCACAGGCTGGTGCACCCACCAAACCAGTTCCCACGTTCTTGGAGTTTTTGTCTAGAGTTCCCACATTTCTTGGGTTTTCATAGTGGTCCACCACCTTTTGTGATATGAACAGAGAGCATTCAGCTCAGGGCTGAACAAACGTCTGCTCAATAACAACAGCGAGGACGCGGAGATTCGTAAAGACGCAATCGCCATGTTGGGTTACCGATGATGAACGGAAATCAACGAGTGAGGACGAGTGAGGACGACCACATTTTGTTGACAAACAAGTGAAGAAGGAAGGTATCACCAGGGTATCACCGATGAAGGAGCCCCTACTAGCGGCTAACAGTAGCTGTTACACCTGCAAGAGGCACTAGCTGTTCAGGCACAGACTccatccatggatgtattataccGACTCCAACTCTCACGATGTTAGGTTAGGTTACCAGTGTAGTGATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84163 lncRNA upstream 3280 19081080 ~ 19081654 (+) False tmem119a
TU84099 lncRNA upstream 102311 18966083 ~ 18982623 (+) True G62796
TU84019 lncRNA upstream 220127 18864575 ~ 18864807 (+) True G62755
TU84005 lncRNA upstream 311826 18772755 ~ 18773108 (+) True G62741
TU83993 lncRNA upstream 336438 18747490 ~ 18748496 (+) True G62732
XR_005639511.1 lncRNA downstream 64671 19151533 ~ 19153584 (+) True LOC120560789
TU84387 lncRNA downstream 462548 19549410 ~ 19554906 (+) True G63005
TU84391 lncRNA downstream 468521 19555383 ~ 19562350 (+) True G63007
TU84393 lncRNA downstream 468521 19555383 ~ 19562350 (+) False G63007
TU84401 lncRNA downstream 488699 19575561 ~ 19581840 (+) False G63015
XM_039803826.1 mRNA upstream 3334 19076561 ~ 19081600 (+) True tmem119a
XM_039803821.1 mRNA upstream 10592 19029407 ~ 19074342 (+) True LOC120560931
XM_039803822.1 mRNA upstream 10592 19033080 ~ 19074342 (+) False LOC120560931
XM_039803823.1 mRNA upstream 10592 19033085 ~ 19074342 (+) False LOC120560931
XM_039803824.1 mRNA upstream 10592 19042109 ~ 19074342 (+) False LOC120560931
XM_039803828.1 mRNA downstream 935 19087797 ~ 19099604 (+) True sart3
XM_039804624.1 mRNA downstream 33283 19120145 ~ 19122475 (+) True cmklr1
XM_039802722.1 mRNA downstream 120917 19207779 ~ 19226925 (+) True limk2
XM_039802029.1 mRNA downstream 164314 19251176 ~ 19255928 (+) True tctn2
XM_039803344.1 mRNA downstream 169924 19256786 ~ 19269028 (+) True atp6v0a2b
XR_005639481.1 other upstream 403773 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 665344 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 668928 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 753704 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 1075616 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 348045 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1390950 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1390950 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1589555 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2502014 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile