RNA id: XM_039803079.1


Basic Information

Item Value
RNA id XM_039803079.1
length 3844
RNA type mRNA
GC content 0.46
exon number 3
gene id rasl10a
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19430401 ~ 19448950 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaagagagagagagaaagagaaagcagtCTTCACCAGCTCATGTCTCTCCAAcgacgcgcgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagtgctcGTTAATAGGCTCCAGATGCCTTTACAGAAAACGCGCGTGTGCATGCTGTGTGGATTGACTTTTCTCTTTTGAATCACGCAGATGTGAATCCATCTTCCTGTCATCGACAAAACAACACGATTATGGCGTTGTGTGCAATTTCAGAACACGTGGGAAGCGTATAGGCTGGCGGCTGTGCGCCCGTCCTCCCTGTGATAGAGAAGCGCGGCGGTGGTGCATCGGTGGAAATGAGTGAGAGGTGCAGAGGAGACATTCAATGAAGACCGCGAGGGCTCCTGTGCGTTTTGGGCAAGGTCAGAGTCTAGCCTGTATGAGATTATGCCCATGCGGGAACAACAAGGAATGACTTTTACGCTTCCTCACGAGGGAAGAGGTCGCCTGGGGATGTCCCCTAAAAAccaagagttttttttctctgtgttggaTCGAAGAGGCAGCGAAAATCCCTCCATCTGCATGATCATGGTTGAGCTTTAGTTTTGACAACCTTCAAGCTGCATGGCTTTCTTTTCTCACTCAGCCCGGAGATAAAGTTTCTTCGCTTTGCCCGACTGGTGGGGGATTTATTCGGCCACCGACTCGTTTCATTGCACCCAGTTAAGGTGATTTAGAGGCTGCTGGTTCAAACAAGGGGGGTGGGGGCAACGGTGGATTAAATTCCATCAGAGCAGCATCAAAACAGCGGCGGCCAGCTGTGTTTCTGGACGGTCACATCTGTTGTTGTCgtcgctgtccatggtgctgaactcGTGCTCCAGGAATGGTGGAGACGCTGAGTATCGCAGTCATCGGCGCTCCCGGAGTGGGGAAAACTTCTATAATCCGCCAGTTCATCTATAACGATTTCTCGGAGGTGTACACACCGACCAGGACCAGATATGTGTACAGACCCTCCGTCATCCTCAACGGGAACATGTATGACCTGAAGATTTTGGACGTCCCGCCAATCTCCTCCTTTCCATCCAGCTCCAGTCAGGAGTGGCTGGATTTGCGCTGCAGAGGTGTGCGCAATGCCAACGCCTACATCCTGGTGTACGACATCTGCTGCGTGGAGAGCTTTGAATATGTCAAGATGATCAGACAGCAGATAGTGGAGCACAGGGAAGGCAGCAGTAGTGAGGTGCCGATCCTGGTGGTGGGCAACAAGAGAGATCTGCAGCGGCAGCGCTTCATGCCTCGCAGGGCGGTGTCAGTCCTGGTGAAGAAGACCTGGAAGTGTGGTTACGTGGAGTGCTCTGCCAAGTATAACTGGCACATAATCCTTCTCTTCAAAGAGCTGCTGGGCATCGCCGTGGCACGGGGCATGCGCCAGAACCACACCTCCATCCGTCTGCAGGGGGCGCTACAGAGGAACCGCTGCACCATCATGTGACCCAGAGAGCTCCCGCCACCCTCTCACCTCAGGAGTGGAGCGGCAGTGGAGAAAAAAGGACTTTTGATCTAAATGGCTGGAAAAATACCCTGTGGCCTGCTGCTTTACTGAGCTGATAGGTTTATTAGTCTTGCGCTGTAAAAGACACTCAAATTTCACACGTGATCATCCGACCACTTCCTAGTCAGATCCTGCCAAATGTGTTAATGCAAGGAAGGAGGTAGGAGAGAGAGCAAGTGAAAACCAATACGACTAGCATAGCACAGTTATTTTTTCTCTCATCAACTATACAGTTACTCATTTGAGGCTTTGCTTCCCAAAATACCCAACCGCAGGTCTCTTTGAGGGTTGTCTTGTGGCTGTAGCTGGGCCTGACAGGGTGGAAGCTGTGTTAGTGAGACTCAAAACGGAGAGGCAGCAATATCATCGAGTCTTCCTTTTGAATTTGTCATATTCAGTAAGGTCAAGAGCAGACGCTCATATCTGACATATTTGGATTTGTTTGATGGTTAATGGTTAACAAGATAGTATAATACAGAGCAAAAGAATAGTTAATGCTTTACTTCTGGGGGTATTATCTTGAAATAGATATGATtagattgtgttttattttagattCTGAGAAGTAGCCtgcattttttcccccatttcAACCTTGGCTTACAGTGAGAGATGTTTGTTCAGGCAAAGGAGGTTTTAAGGTTGTCTAGCAGCAGAAAATGCTGCAGTCCCTATCGTGATGTACTGTGTGGCTTTCATCTGCTCCCTCCTCTCATTCAGTGTCTGTTTACGTTAAATCCAGGAAACAGGGGACCTGCAGGAGGCTGCAGAGCCTGAAACAAACCCCTGTATGGTTGTTGTCATGTggatgtttatatgtgtgtgtttgtgtgtgtgagagagagagagagagagtaagaaaGCAAGACAGAGAGGCAGGTTTGAAAGCTGACATTCAGGCAAGCAAAGGACAGACAGCACGATAAGAGATGTAGATGTAGAAGCGTTGGATTAGGAAGGAGCAATAAAATCTCACAGGGACAACTGTATGACTATATGTACCAccatattatataaaaaatgccTCACATATAAGTAGACGTAATCTACTTGTGCTCATATATCCTGCAGAAATAAAGAAGCAGAGCttaaagctgtggtaggcaCTTTATTTTTGCTGTTGTTGGGCAAGTAttccataataatctttcagcatattgtaatttgAGTGGtatgagagaaaactagacttctgcacaTTCTCTTGGCTCTGTTTCCAGGCTTCAGGATATCTAGCTGTCACGGGTGACTTTggtcaatcacaggtcattGAAGAGAGATAGAGCATTCCCATTGGCtgctcagtgcatgcattgccCTTGCGACaaaaaggggagagggagagctgcTGGAAGAGATTTCATTCTACTTCCAATTCTGCCATTTTTTTGCATTCTACCCACTGCAGTTTTGAAGGGGCTGTCCTTGATATTGAGAATTATAGCAGCAGACAAATATTTGccatgtaaagatatagtggagtaatgtgtcctgagcagagaattaAGTCAcactatctctgtgtgtgttgtaaagagtttctgtgttctttgtttttgtaGCCGGTTCGACCACATGtgcatgttagtgcatgtgGCCGGGAAAAAACATAGGTGTTTCACGAATTGAGGAATGGTCTGTGAGAGCTGTGTGGAAGCAATCCCAGCccgctgttgtttttttcagtatttcaaGTACAGCCCCTTTGATGACTTCCACAAAAACACCCCATGAGTGCATCACAGGGAACCTTAATAAAGCTTTCATATCAGTATCTGAATAGTATCTAATTGGTAATGTTGTGAGATTAACagttgcttttttatttaattaggcCTAGATACAGTAGGTAGTTTGTGAACAtggctgcactgaaagtaagcAGACCTATTGTATATAAGAGTGATTCATGGAGTAATTGATTTGCATGCTTTTGTTGGTAGAGCCAACAGGTCAGGGTTTAATTGCACTGATGTGAAAATTTGATATTGTGTTTAATTTTTGTAATACAGTACATGGTTTTCTGACACTGTAATGAGCAGCTGAGTGGAGTGAATGTGGTCGTTTTTCACTGGCACGTGAGAGCACAAGCTCATGATCTCTCCAAGATGTAGTGTTGGACCCTTCAATCAGGCAGATggctgtgtttgttttattcttgtacaaaaaaagaaatatgtagCAGCAACTGTGTGTAGCATGAGTTCTCATCAGTTTGTCTGTGTGCGTTTCCAAATAAAAAGGGCTACCGTTTTTTATCAGAAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07851 RASL10B; Ras-like protein family member 10B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639511.1 lncRNA upstream 276817 19151533 ~ 19153584 (+) True LOC120560789
TU84161 lncRNA upstream 343539 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA upstream 343539 19085914 ~ 19086862 (+) False G62836
TU84163 lncRNA upstream 348747 19081080 ~ 19081654 (+) False tmem119a
TU84099 lncRNA upstream 447778 18966083 ~ 18982623 (+) True G62796
TU84387 lncRNA downstream 100464 19549410 ~ 19554906 (+) True G63005
TU84391 lncRNA downstream 106437 19555383 ~ 19562350 (+) True G63007
TU84393 lncRNA downstream 106437 19555383 ~ 19562350 (+) False G63007
TU84401 lncRNA downstream 126615 19575561 ~ 19581840 (+) False G63015
TU84402 lncRNA downstream 126615 19575561 ~ 19633642 (+) True G63015
XM_039803144.1 mRNA upstream 2684 19399883 ~ 19427717 (+) False ap1b1
XM_039803142.1 mRNA upstream 2684 19400169 ~ 19427717 (+) True ap1b1
XM_039803143.1 mRNA upstream 2684 19400169 ~ 19427717 (+) False ap1b1
XM_039803145.1 mRNA upstream 2684 19400169 ~ 19427717 (+) False ap1b1
XM_039803146.1 mRNA upstream 2684 19400169 ~ 19427717 (+) False ap1b1
XM_039803078.1 mRNA downstream 5302 19454248 ~ 19504544 (+) False osbp2b
XM_039803072.1 mRNA downstream 5364 19454310 ~ 19504544 (+) True osbp2b
XM_039803074.1 mRNA downstream 5481 19454427 ~ 19504544 (+) False osbp2b
XM_039803073.1 mRNA downstream 5483 19454429 ~ 19504544 (+) False osbp2b
XM_039803075.1 mRNA downstream 5486 19454432 ~ 19504544 (+) False osbp2b
XR_005639481.1 other upstream 749240 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1010811 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1014395 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1099171 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 1421083 17998686 ~ 18009318 (+) False cmya5
XR_005639482.1 other downstream 1028866 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1028866 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1227471 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2139930 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 3480953 22929899 ~ 22930205 (+) True G63905

Expression Profile