RNA id: TU84401


Basic Information

Item Value
RNA id TU84401
length 2686
lncRNA type inter_gene
GC content 0.41
exon number 6
gene id G63015
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19575561 ~ 19633642 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGACTTAATAacttttattgtaaaatgtaacaaTGTGTGTTAACATGAAGCTTTTACaatcaataatacaaaatggATATCAAAAGGCACTGTGGTTTTTCACAAGGCCATTCATGACATGATTACTACATAATTTAAGTTAAATAGATTTGTTCCTAAATAATATGTTAATAGAAAATTATAACCATATCTATTTTACTTACATTCAGATACATTCACTATTTTCAGGTTAGAGGTTAAGGCATGGGTGGTAGCATGTTAGCTTACAAGACATATTTAGCTTATCATATTCATTCATGTGCCTGAAGGATAGCTGTTGAACCTAAAACATGCCTTGAAGGTCCATTCATACTGTATCTACCTTTCATTTTGGTTTACTGAAACAGATTCTGACATTGGAATTAGAAGTTTCCATCTGTTAATTAAAATTCATACATTGCTGACCTACATATTCATAAAGGATTTTGAATTAGAAATGTTTTGAATTAGAAttttcattttgtcaaaaataGGGATTCATGCAATCACAGTCTTGGAACTGGAATAACATTTACACACTTTAAAACAGATTGTAAACGGTGGGTATATTTAACCTGTCAAAATGAAATCCTGTGCAAATAGAGCCTTGAAATCCCAAGTCAGCAAATCTGAGAAAATGGTGCATATTTATACAACAAACATATCCACTGCAAAACCTTAACATTTTTTTGGATTGTTGTAATCTGTGTGTAATCTGAAATTATTAAAAACTCCAATTACCAAAtgttggtgtgtatgtttaagaAAACGTCAAGACCTGAAAAGTGTAGCCGTACGGACAAAACCAAGGTAAAAGCTTCAACAAACAGTGATATAACTAAGATTAGAAGGTGCTCAGCAGTCACCCCTTTTTGTGCGGGAAAACACTTCAGttcttcttaaaaaaaagaccttTTTGCACATTTTCAAGACAATAATGGTACCAAAGCCAATGGACAGAAAGTATTAACTCAAACACTGTCTTTTGATTTCCCATCAAATAATGTTTGACTAACTTTACTTTTATCCCAAACAAATGTTGTAAATATAGTGTTAAATATAGTAAATACAGGGCATTGCCAGTGACATAAATACATCAGTGAGAAAGAcatcaagataaaaaaaataacatatcaGAACTAAATGAGCAGTCAACAGTTGGAAAAAAGTGCCAAGTACATGCACTGTGTGAAATAAAAAGGTCctctaaaaatgcaaaaaagctAACTAAACGAACAGAAAAAAACTGATAGGATAGGTCATTCCAAAATCAATCAAATACATTGAACATGCTTTTCTCTTTCATGCAACACAGGCATTAACGATTCTGTCTTTCTTCTCCTTCCTTCTCCTCATCGTCCCATCTCACCTGCAGCCCCAGGCGGACTCGTTTGGTGACTGCCGTCTCAGGAAACGTGGCCTGGACCAATGGCACCAGGTTACTTGTCAGCGAACCTCCTTCTGGTCCAATCAGGTCGCTCTCTTGCTGGACTCGTGACACAACAGCAAAGTAAAGGGGGAAGTCGGTGGAGATGATGCGACGGATTCGCTTCTTCCCGAGCTCTTCTTGACTTTCTAATTCTTCATCCATCCCATTGAGGATTGTTTCTAGCACCTCGTCGCCGTAGCGATTGCGATGTTCTTTCCAGACTGAGCCATTCTCGCTCCTCAGCACCACGAGCTCCCTGTCACCACGACCCAGAGCAGCAAAGTGGGGGATCTCCACTATCACCGGTctgccacacaacacacatggaATTATACATGAACAAATGACAATTCTTTTTTAGACGTATatgaaataagaataaaaaatgttgtgcatttaGACGAAGCAAGAAGAATCTTGACTATTTCCAGTTTCAGTTGCTTCCTTACCCCAGGAACTGCATCCCGGCTGGCCCCAGGGAGATGATCCTGCTGGCCAGGCCCTCTCCCTCCACCAGCGGAGGAGGGCTGGTCAGCTTCTGTGGCTTCACCAGGCGACAGGTGATGCGGGTGGGTGCCGCACAGGTTCGCGGAGGTATGATGACACGCAGACCGTTATGCCTGCTGCCTCGCATTGAGCCGCCCCGAGCATCTACCATAAAACTGACCAGGAACCTGTAATTGGACAGAGATTGTAACAATTAACTGCCAGATCGGATATTAAATAGATTAAATTCAGTGAAGTACAATGTTTTGCTGACCCTGTGTGTATGGGACTGGCGACCGGGCTGACATTGTCTGACGTCTCCGTCGCTGGGCTGCTGGGAATCAGTGAGTCATCATCATATTCTTTGGGCAGTGGAAGTGGAGTGTGTTGCTGATCTAGCTCGTGTTCTTTCAGGATAACGGTTTCCGGAGAGACTCTGGGAATCCTGGGAATGGCTGGCGAGTAATCTGCTGTGCCCAGCCCTCTCTCGTACTCCAGTGATTTCTTGGGGGAGAGGAAATCGTCATCATGGTCTTTCATGTCATCCATCTTCATGTACCTGGCCCCTTCTGTCCCCAAGAGCTCCTCTCCTAATGTTAGCTGTGCAATTCCTTCATCCTCAGACACGTCCAGTATCTCATCCACTGTTTCTGGGAAACTCATGCGATGTTTCTCTGTGGTCGTCTGCACAGAAACAAGAGGAAGAACCAGTAACTAATACAACAATAATTGTAAACTTTTATTTATCATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84391 lncRNA upstream 13211 19555383 ~ 19562350 (+) True G63007
TU84393 lncRNA upstream 13211 19555383 ~ 19562350 (+) False G63007
TU84387 lncRNA upstream 20655 19549410 ~ 19554906 (+) True G63005
XR_005639511.1 lncRNA upstream 421977 19151533 ~ 19153584 (+) True LOC120560789
TU84161 lncRNA upstream 488699 19084934 ~ 19086862 (+) True G62836
TU84405 lncRNA downstream 132 19581972 ~ 19584473 (+) True G63016
TU84418 lncRNA downstream 74392 19656232 ~ 19656496 (+) True G63029
TU84473 lncRNA downstream 134658 19716498 ~ 19717475 (+) True G63068
TU84485 lncRNA downstream 165109 19746949 ~ 19747469 (+) True G63076
TU84494 lncRNA downstream 177972 19759812 ~ 19763054 (+) False c6h2orf68
XM_039802954.1 mRNA upstream 28275 19544329 ~ 19547286 (+) True spaw
XM_039802958.1 mRNA upstream 31296 19540250 ~ 19544265 (+) False dguok
XM_039802956.1 mRNA upstream 31296 19540526 ~ 19544265 (+) True dguok
XM_039802957.1 mRNA upstream 31296 19540526 ~ 19544265 (+) False dguok
XM_039802955.1 mRNA upstream 35527 19536302 ~ 19540034 (+) True tcn2
XM_039803000.1 mRNA downstream 167361 19749201 ~ 19753977 (+) True sftpbb
XM_039803002.1 mRNA downstream 177756 19759596 ~ 19763524 (+) False c6h2orf68
XM_039803001.1 mRNA downstream 178953 19760793 ~ 19763524 (+) True c6h2orf68
XM_039803014.1 mRNA downstream 218282 19800122 ~ 19806542 (+) True selenom
XM_039803582.1 mRNA downstream 301370 19883210 ~ 19887470 (+) True mthfd2
TU84360 other upstream 126611 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 894400 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1155971 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1159555 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1244331 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 895972 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 895972 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1094577 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2007036 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 3348059 22929899 ~ 22930205 (+) True G63905

Expression Profile