RNA id: TU84473


Basic Information

Item Value
RNA id TU84473
length 276
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G63068
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19716498 ~ 19717475 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGCCTTAGTGAAGACTCCCTCGATCTCCCACCAAAGTCGGTCTCCCTGGCGGACTCTCTGGAACTGAGTGGAAATCAAGCATGCAAACAAGGGTCCTACTCTTCCTCCTGGGACAAACGGCTCAGACAATCCTCCCAGCCACACATCGATGTTGTCAGGTGTTCCGTAGAGATCCAGCAGTTTCTTGGCCAGATTGCTGTTCTGAAGCACCTGAGCCAGCTCTGCCTGATTTCGTGGCTGTGACAGCCCACAGAACCCACGCCAtttgttgtagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84418 lncRNA upstream 60002 19656232 ~ 19656496 (+) True G63029
TU84402 lncRNA upstream 82856 19575561 ~ 19633642 (+) True G63015
TU84405 lncRNA upstream 132025 19581972 ~ 19584473 (+) True G63016
TU84401 lncRNA upstream 134658 19575561 ~ 19581840 (+) False G63015
TU84391 lncRNA upstream 154148 19555383 ~ 19562350 (+) True G63007
TU84485 lncRNA downstream 29474 19746949 ~ 19747469 (+) True G63076
TU84494 lncRNA downstream 42337 19759812 ~ 19763054 (+) False c6h2orf68
TU84495 lncRNA downstream 43279 19760754 ~ 19763054 (+) False c6h2orf68
TU84504 lncRNA downstream 63490 19780965 ~ 19832327 (+) True G63087
TU84572 lncRNA downstream 155626 19873101 ~ 19875144 (+) True G63128
XM_039802954.1 mRNA upstream 169212 19544329 ~ 19547286 (+) True spaw
XM_039802958.1 mRNA upstream 172233 19540250 ~ 19544265 (+) False dguok
XM_039802956.1 mRNA upstream 172233 19540526 ~ 19544265 (+) True dguok
XM_039802957.1 mRNA upstream 172233 19540526 ~ 19544265 (+) False dguok
XM_039802955.1 mRNA upstream 176464 19536302 ~ 19540034 (+) True tcn2
XM_039803000.1 mRNA downstream 31726 19749201 ~ 19753977 (+) True sftpbb
XM_039803002.1 mRNA downstream 42121 19759596 ~ 19763524 (+) False c6h2orf68
XM_039803001.1 mRNA downstream 43318 19760793 ~ 19763524 (+) True c6h2orf68
XM_039803014.1 mRNA downstream 82647 19800122 ~ 19806542 (+) True selenom
XM_039803582.1 mRNA downstream 165735 19883210 ~ 19887470 (+) True mthfd2
TU84360 other upstream 267548 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1035337 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1296908 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1300492 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1385268 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 760337 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 760337 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 958942 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1871401 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 3212424 22929899 ~ 22930205 (+) True G63905

Expression Profile