RNA id: XM_039803002.1


Basic Information

Item Value
RNA id XM_039803002.1
length 1654
RNA type mRNA
GC content 0.40
exon number 4
gene id c6h2orf68
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19759596 ~ 19763524 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCAGACAAGACTGAATCAGCTGCAGAGCTATAGGGGAGGACAAGACTAACTAACTTTTAGCACTAACATTGGCTATGCACATTTAACAATCTTGCCTGTTTATGGTGTCAAGGGATGACTATGATAAAGAGGTGAAGCAAGCAAAAGAGGTGAAGCAAGCTAAAGAGCTTCAGCGGCGGAGGCACACCACAACCCCTAGACGACCCCGTCGACCTGATATTCAAGTGTACCATCCTCGACGCAGACATGGATCAGAGCCGGGGGCCAGTGCTGAGGCTGAAGAGTCTAATGAGAGTGGGTCGAGCACAGAGACGGAGACCCATGGTACTGAACTCTTCTGGCTTGACTATCAGGCAGACTCTGGTACCATTACCTCCTTCCTTGTGCACAAGGAGGATAATCCTGAGAAGGTGGTGGAACGTGTCACAGAGAACAATATCCTAGATTCAGCCATGAGGGCAGCTCTAGAGGCTCGACTTCAAAAGGAAATTGACAAAAGACGAGACAAACGCTGAGTGATATTCTCAAATAGTAGATTATGATGACAGAGGGGCTACACGCAAAGAGGAGCAAGACTTCATTTGCAGTTCTACACTCCTAGAAAGCATCAATGCTGTTGACAGTGTAAAAGGAGGACTCTGGGATCATGAACAGTGACTGTCAGAAGAGATCCAACTTGATGAGCCACAAATAATCCGTCTTCTGTTTTCTAAGGAGAAGGAACAGCACTTATCAAAGACAGTATAGTTGGGAGTTGACTGTCATGTTTACTACATTTTACTCCCCGTGGATTGTTACCTCATACCCTCATTCATAACTTTAAGGACACGTTGTGAGAGAGCACTGTTAACCATCCTCCTCTGTTGAACATGTCCTGTGTTTCTTGTGTTTACAAAGATCTAGTTTTTTATAAACAAGATTTTGACTTTTCTTGGAAAAATGCTGTGAAGGGAACATCAGTCTATCAGCGATTCTATGTTTAGAAATGTGAGAATTTAGTTTGGTTTCTTTTTGAGTTGGAGTTTAGTGGATGTCcatgatgtgtttgtgtggaaactgtgtttcattgttttcagtattctaatttattttagattgttgaaatacttttatttttgatactgtaatattttgagGACACAACTCAGTATATGTATAAAatgacacatatatatataaaggcaTTTATGACTGTCCAAATGTGTCATAAAATGATATGCTGTTAAAACACTCAAATCGGGGAATAACTTTGATCACTTCTATCCTGAAATATACATATTGGTGGGAATATAGAATTGAAAAATACTTACTGAAGAACAGCAAAATACTGTATCACTTTAAACTGAGTGATCGAAGTGTTTCACATCATGTCCTCAGCAGGTGGCAGTATGAATCAGCTTTTCAGACTGCATGCCATCTTCTGTGtctaaactctttttttttttttatcataagtCAAAGCAGTGGATAGTAGCACTGTGTTACAAGAATACAAGACAAATAGCCAAACTGTAATTTTCTATACACAAGAAATGAACAGCTATTCTCAATCCTTCTGAAATGTCACTTCTGTGGGCAAGGACACTTCAGGTACTACTTGTTGAACTTGCATCATTTTTTACTCAAAAGGTAGAAATAAACTGGAGAGCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84485 lncRNA upstream 12127 19746949 ~ 19747469 (+) True G63076
TU84473 lncRNA upstream 42121 19716498 ~ 19717475 (+) True G63068
TU84418 lncRNA upstream 103100 19656232 ~ 19656496 (+) True G63029
TU84402 lncRNA upstream 125954 19575561 ~ 19633642 (+) True G63015
TU84504 lncRNA downstream 17441 19780965 ~ 19832327 (+) True G63087
TU84572 lncRNA downstream 109577 19873101 ~ 19875144 (+) True G63128
TU84665 lncRNA downstream 251480 20015004 ~ 20015249 (+) True G63189
TU84666 lncRNA downstream 252708 20016232 ~ 20016661 (+) True G63190
TU84668 lncRNA downstream 254593 20018117 ~ 20018412 (+) True G63192
XM_039803000.1 mRNA upstream 5619 19749201 ~ 19753977 (+) True sftpbb
XM_039802954.1 mRNA upstream 212310 19544329 ~ 19547286 (+) True spaw
XM_039802958.1 mRNA upstream 215331 19540250 ~ 19544265 (+) False dguok
XM_039802956.1 mRNA upstream 215331 19540526 ~ 19544265 (+) True dguok
XM_039802957.1 mRNA upstream 215331 19540526 ~ 19544265 (+) False dguok
XM_039803014.1 mRNA downstream 36598 19800122 ~ 19806542 (+) True selenom
XM_039803582.1 mRNA downstream 119686 19883210 ~ 19887470 (+) True mthfd2
XM_039802415.1 mRNA downstream 125726 19889250 ~ 19891659 (+) True arl6ip4
XM_039803911.1 mRNA downstream 177949 19941473 ~ 19942849 (+) True mtrfr
XM_039803912.1 mRNA downstream 178084 19941608 ~ 19942849 (+) False mtrfr
TU84360 other upstream 310646 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1078435 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1340006 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1343590 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1428366 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 714288 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 714288 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 912893 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1825352 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 3166375 22929899 ~ 22930205 (+) True G63905

Expression Profile